prot_H-elongata_contig6391.13974.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6391.13974.1
Unique Nameprot_H-elongata_contig6391.13974.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length280
Homology
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BLAST of mRNA_H-elongata_contig6391.13974.1 vs. uniprot
Match: A0A6H5KCR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR7_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.230e-36
Identity = 92/274 (33.58%), Postives = 144/274 (52.55%), Query Frame = 0 
Query:    5 ARKALEEELQNETSEAEDSKKLAIGYASVLANLVCAQAIAGSSSDMKSANKLAKSVREKALR-RDPYTLRLVSGAYAEPFLSHLLEHCAPVTGCVRQY---------GGDDDEGDVLGLVAMLVPEAMKTMGDQALHLHLSALCNALTDAVYDVIRKLQDEGGTSPTCCGXXXXXXGGQETEQTASG--------------QRSPQHPVYASIRLLKEVCQWLDLFFEARTGTKEACRAACLGALWALSQAASDHADASIAVKMRESIKIFDAS 254
            AR+  EEE++        +++ A   ++++ N++   A   +S D+K+AN +A+ +R++A+  RD + L L+   +A        E+CAPV+G +R Y         GG     D+L       P A+K M D  L++HLS+LCN+LTDAV DV++KL   G  +            G  T + A G              +   +  V+A+IR++KEVC WL LFF AR GTK AC+A+C G L  L +AA D  D  +  ++ +SIK+  +S
Sbjct:  204 AREDWEEEVRQYREAGNQAQETADSVSAMITNILYYMATGSASCDLKTANAVARGIRKQAVEMRDGHALELLKAPFAVSLFRAYAENCAPVSGFLRCYPSSPFSADVGGVGGTDDLLAXXXXXAPAAIKAMDDNILNVHLSSLCNSLTDAVGDVVQKLDSLGREALKAAN-------GAGTREAAGGGGXDXXXXXXAREERERDERAVHAAIRIVKEVCMWLSLFFAAREGTKAACQASCYGVLSDLKRAAEDQKDQQLRAQLHDSIKLLASS 470
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6391.13974.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCR7_9PHAE9.230e-3633.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6391contigH-elongata_contig6391:467..3478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6391.13974.1mRNA_H-elongata_contig6391.13974.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6391 447..4180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6391.13974.1 ID=prot_H-elongata_contig6391.13974.1|Name=mRNA_H-elongata_contig6391.13974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
MPEEARKALEEELQNETSEAEDSKKLAIGYASVLANLVCAQAIAGSSSDM
KSANKLAKSVREKALRRDPYTLRLVSGAYAEPFLSHLLEHCAPVTGCVRQ
YGGDDDEGDVLGLVAMLVPEAMKTMGDQALHLHLSALCNALTDAVYDVIR
KLQDEGGTSPTCCGGGGSGSGGQETEQTASGQRSPQHPVYASIRLLKEVC
QWLDLFFEARTGTKEACRAACLGALWALSQAASDHADASIAVKMRESIKI
FDASPLTPPQPQPPGGGDATGSSAAPDES*
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