prot_H-elongata_contig63880.13968.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63880.13968.1
Unique Nameprot_H-elongata_contig63880.13968.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 5.020e-71
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            M+GKGKGGRG KKSTTRS KAGLQFPVGR+GRFLK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VKK
Sbjct:    1 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVKK 122
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7G193_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G193_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 1.720e-69
Identity = 112/122 (91.80%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KKSTTRS KAGLQFPVGR+GRFLK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK VK
Sbjct:   46 MSGKGKGGRG-KKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKTVK 166
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 2.030e-66
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KKST++S KAGLQFPV RIGR+LK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D7FVQ5_ECTSI (Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ5_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.040e-65
Identity = 107/119 (89.92%), Postives = 113/119 (94.96%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KKST++S KAGLQFPV RIGR+LK GKY+ RVGAG PVYLAAVLEYLTAEVLELAGNAARDNKKARI+PRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK
Sbjct:   52 MSGKGKGGRG-KKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 169
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: D8LLP0_ECTSI (Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP0_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.410e-65
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG KK T+RS KAGLQFPVGRIGRF+K GKYS RVG G PVY+AAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELN+LLG+ TIASGGVLPNIHAVLLPKK
Sbjct:    1 MSGKGKGGRG-KKITSRSAKAGLQFPVGRIGRFIKQGKYSSRVGGGAPVYMAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNRLLGDATIASGGVLPNIHAVLLPKK 118
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A448ZH28_9STRA (Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 RepID=A0A448ZH28_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.310e-65
Identity = 101/119 (84.87%), Postives = 111/119 (93.28%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M+GKGKGGRG+KKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHA+LLPKK
Sbjct:    1 MSGKGKGGRGEKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAILLPKK 119
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.310e-65
Identity = 103/122 (84.43%), Postives = 111/122 (90.98%), Query Frame = 0 
Query:    1 MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVK 122
            M+GKGKGGRG KKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIASGGVLPNIHAVLLPKK  K
Sbjct:    1 MSGKGKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKSAK 122
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A835ZLE9_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE9_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.610e-64
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 0 
Query:    3 GKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKVVKK 123
            GKGKGGRGDKK+ ++S KAGLQFPVGR+GRFLK G+Y++RVGAG PVY+AAV+EYL AEVLEL+GNAARDNKK+RI+PRHIQLAVRNDEELNKLLG+VTIA+GGVLPNIHAVLLPKK   K
Sbjct:    5 GKGKGGRGDKKAVSKSAKAGLQFPVGRVGRFLKQGRYAKRVGAGAPVYMAAVMEYLCAEVLELSGNAARDNKKSRIIPRHIQLAVRNDEELNKLLGKVTIAAGGVLPNIHAVLLPKKTRSK 125
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: A0A836CG77_9STRA (Histone H2A n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG77_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.580e-64
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = 0 
Query:    1 MTGKGKGGRGD--KKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            M GKGKGGRG   KKST++S KAGLQFPV R+GRFLK G+Y++RVGAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHIQLAVRNDEELNKLLG VTIASGGVLPNIHAVLLPKK
Sbjct:    1 MAGKGKGGRGAEAKKSTSKSSKAGLQFPVARLGRFLKVGRYAERVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHIQLAVRNDEELNKLLGNVTIASGGVLPNIHAVLLPKK 121
[Close]
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC)

HSP 1 Score: 199 bits (506), Expect = 5.900e-64
Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = 0 
Query:    3 GKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVYLAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 119
            GKGKGGRGDKKSTT S KAGLQFPVGRIGR+L+ GKY+ R+GAG PVYLAAVLEYL AE+LELAGNAARDNKK+RIVPRHI LAV+NDEELNKLLG VTIA+GGVLPNIHA+LLPKK
Sbjct:    5 GKGKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKK 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63880.13968.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI9_ECTSI5.020e-7191.87Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
D7G193_ECTSI1.720e-6991.80Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KG79_9PHAE2.030e-6689.92Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FVQ5_ECTSI1.040e-6589.92Histone H2A n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LLP0_ECTSI1.410e-6588.24Histone H2A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A448ZH28_9STRA6.310e-6584.87Histone H2A n=12 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A6U2JFS4_9STRA6.310e-6584.43Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A835ZLE9_9STRA1.610e-6481.82Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CG77_9STRA4.580e-6485.12Histone H2A n=2 Tax=Tribonema minus TaxID=303371 R... [more]
B7FWQ2_PHATC5.900e-6485.47Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 Rep... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002119Histone H2APRINTSPR00620HISTONEH2Acoord: 42..57
score: 84.58
coord: 57..70
score: 90.54
coord: 99..117
score: 76.04
coord: 71..85
score: 74.98
coord: 13..35
score: 67.74
IPR002119Histone H2ASMARTSM00414h2a4coord: 3..122
e-value: 7.5E-77
score: 271.3
IPR032454Histone H2A, C-terminal domainPFAMPF16211Histone_H2A_Ccoord: 91..123
e-value: 1.7E-18
score: 66.1
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 9..88
e-value: 1.4E-14
score: 54.6
IPR009072Histone-foldGENE3D1.10.20.10coord: 2..123
e-value: 9.2E-60
score: 202.0
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 3..122
NoneNo IPR availablePANTHERPTHR23430:SF251coord: 5..123
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 5..123
IPR032458Histone H2A conserved sitePROSITEPS00046HISTONE_H2Acoord: 21..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63880contigH-elongata_contig63880:2814..3185 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63880.13968.1mRNA_H-elongata_contig63880.13968.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63880 2814..3185 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63880.13968.1 ID=prot_H-elongata_contig63880.13968.1|Name=mRNA_H-elongata_contig63880.13968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MTGKGKGGRGDKKSTTRSFKAGLQFPVGRIGRFLKAGKYSQRVGAGTPVY
LAAVLEYLTAEVLELAGNAARDNKKARIVPRHIQLAVRNDEELNKLLGEV
TIASGGVLPNIHAVLLPKKVVKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002119Histone_H2A
IPR032454Histone_H2A_C
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
IPR032458Histone_H2A_CS