prot_H-elongata_contig63797.13954.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig63797.13954.1
Unique Name	prot_H-elongata_contig63797.13954.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	130

Homology

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A6J8CE71_MYTCO (PFS2 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8CE71_MYTCO)

HSP 1 Score: 160 bits (406), Expect = 9.420e-46
Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++++TSTNK RCP+FCLAWTPEG  R +TG SSGEFTLW    FNF TILQAH ++VR+M WS + S +I+GDHSG IKYWQ++M  V   + H   P+RG+SF P+D+KF +CSDD TVR
Sbjct:  135 KFIRTSTNKFRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRAMVWSNNDSWMITGDHSGFIKYWQSNMNNVKMFQGH-KEPVRGISFSPSDNKFTTCSDDGTVR 253

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A0L0CNP3_LUCCU (Uncharacterized protein (Fragment) n=1 Tax=Lucilia cuprina TaxID=7375 RepID=A0A0L0CNP3_LUCCU)

HSP 1 Score: 157 bits (397), Expect = 4.000e-45
Identity = 73/121 (60.33%), Postives = 91/121 (75.21%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++VKT+TNK RCP+F LAWTPEG  R +TG SSGEFTLW    FNF TILQAH ++VR+M WS + S +++GDH G +KYWQ++M  V   +AH    IRG+SF PTDSKF SCSDD T+R
Sbjct:  135 RFVKTATNKMRCPIFTLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMFQAH-KEAIRGISFSPTDSKFVSCSDDGTLR 253

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: UPI00065B9E5A (pre-mRNA 3' end processing protein WDR33 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B9E5A)

HSP 1 Score: 162 bits (409), Expect = 1.270e-43
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++V+TSTNK RCP+FCL WTPEG  R +TG SSGEFTLW    FNF TILQAH +AVR+M WS S + +++ DH+G IKYWQ++M  V   +AH   PIRG+SF PTDSKFASCSDD TVR
Sbjct:  147 RFVRTSTNKFRCPIFCLTWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHETAVRAMRWSHSDAWMVTADHAGYIKYWQSNMNNVKMYQAH-KEPIRGISFCPTDSKFASCSDDGTVR 265

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A3S1BDQ9_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1BDQ9_ELYCH)

HSP 1 Score: 162 bits (409), Expect = 1.270e-43
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++V+TSTNK RCP+FCL WTPEG  R +TG SSGEFTLW    FNF TILQAH +AVR+M WS S   +++ DH+G IKYWQ++M  V   +AH   PIRG+SF PTDSKFASCSDD TVR
Sbjct:  144 KFVRTSTNKFRCPIFCLTWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHETAVRAMRWSHSDGWMVTADHAGYIKYWQSNMNNVKMFQAH-KEPIRGISFCPTDSKFASCSDDGTVR 262

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A7R8VIP1_TIMDO (Hypothetical protein n=2 Tax=Timema TaxID=61471 RepID=A0A7R8VIP1_TIMDO)

HSP 1 Score: 156 bits (394), Expect = 1.310e-43
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++VKT+TNK RCP+FC+AWTPEG  R +TG SSGEFTLW    FNF TILQAH S VR+M WS +   +++GDH+G +KYWQ++M  V   +AH    IRGLSF P+D+KF +CSDD T+R
Sbjct:  127 RFVKTATNKMRCPIFCMAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDMWMVTGDHAGYVKYWQSNMNNVKMFQAH-KEAIRGLSFSPSDNKFVTCSDDGTLR 245

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: UPI001ED8A8DC (pre-mRNA 3' end processing protein WDR33 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A8DC)

HSP 1 Score: 161 bits (407), Expect = 2.360e-43
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++VKT+TNK RCP+FCLAWTPEG  R +TG SSGEFTLW    FNF TILQAH S VR+M WS +   +++GDHSG +KYWQ++M  V   +AH    IRGLSF PTD KFA+CSDD T+R
Sbjct:  127 RFVKTATNKMRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDVWMVTGDHSGYVKYWQSNMNNVKMFQAH-KEAIRGLSFSPTDQKFATCSDDGTIR 245

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A8B6H0B5_MYTGA (Polyadenylation factor subunit 2 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H0B5_MYTGA)

HSP 1 Score: 160 bits (406), Expect = 3.190e-43
Identity = 73/121 (60.33%), Postives = 93/121 (76.86%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++++TSTNK RCP+FCLAWTPEG  R +TG SSGEFTLW    FNF TILQAH ++VR+M WS + S +I+GDHSG IKYWQ++M  V   + H   P+RG+SF P+D+KF +CSDD TVR
Sbjct:  135 KFIRTSTNKFRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDTSVRAMVWSNNDSWMITGDHSGFIKYWQSNMNNVKMFQGH-KEPVRGISFSPSDNKFTTCSDDGTVR 253

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A3P7P4F8_DIBLA (Uncharacterized protein (Fragment) n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7P4F8_DIBLA)

HSP 1 Score: 150 bits (378), Expect = 3.710e-43
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0

Query:    3 VKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            V+TSTNK +CP++C+ WTPEG  R ITG  SGEFTLW    FNF TILQAH S +R M WS +   L++ DHSG +KYWQ +M  V   +AH   PIRG+SF P D+KF +CSDDSTVR
Sbjct:   88 VRTSTNKNKCPIYCVCWTPEG-RRLITGAYSGEFTLWNGLTFNFETILQAHESQIRCMKWSHNDDWLLTADHSGYVKYWQANMNNVEMYQAH-KEPIRGVSFSPFDTKFVTCSDDSTVR 204

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A8K0KG33_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KG33_LADFU)

HSP 1 Score: 152 bits (385), Expect = 4.170e-43
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLS-----------FGPTDSKFASCSDDSTVR 121
            ++VKT+TNK RCP+FCLAWTPEG  R +TG SSGEFTLW    FNF TILQAH S VR+M WS +   +++GDHSG +KYWQ++M  V   +AH    IRGLS           F PTD KFA+CSDD T+R
Sbjct:  128 RFVKTATNKMRCPIFCLAWTPEG-RRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNDVWMVTGDHSGYVKYWQSNMNNVKMFQAH-KEAIRGLSVCCFEANMRNNFSPTDQKFATCSDDGTIR 257

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BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Match: A0A1J1IDJ2_9DIPT (CLUMA_CG011202, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1IDJ2_9DIPT)

HSP 1 Score: 159 bits (403), Expect = 5.110e-43
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0

Query:    1 QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTILQAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIRGLSFGPTDSKFASCSDDSTVR 121
            ++VKT+TNK RCP+F LAWTPEG  R ITG SSGEFTLW    FNF TILQAHT +VR+M WS + S +++GDH+G +KYWQ++M +V   +AH   PIRG+SF PTDSKF +CSDD T+R
Sbjct:  118 RFVKTATNKMRCPIFTLAWTPEG-RRLITGASSGEFTLWNGLTFNFETILQAHTVSVRAMIWSHNDSWMVTGDHNGYVKYWQSNMNQVCSFQAH-KEPIRGISFCPTDSKFVTCSDDGTLR 236

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot

BLAST of mRNA_H-elongata_contig63797.13954.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6J8CE71_MYTCO	9.420e-46	60.33	PFS2 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0...	[more]
A0A0L0CNP3_LUCCU	4.000e-45	60.33	Uncharacterized protein (Fragment) n=1 Tax=Lucilia...	[more]
UPI00065B9E5A	1.270e-43	63.64	pre-mRNA 3' end processing protein WDR33 n=1 Tax=A...	[more]
A0A3S1BDQ9_ELYCH	1.270e-43	63.64	Uncharacterized protein n=1 Tax=Elysia chlorotica ...	[more]
A0A7R8VIP1_TIMDO	1.310e-43	58.68	Hypothetical protein n=2 Tax=Timema TaxID=61471 Re...	[more]
UPI001ED8A8DC	2.360e-43	61.98	pre-mRNA 3' end processing protein WDR33 n=1 Tax=I...	[more]
A0A8B6H0B5_MYTGA	3.190e-43	60.33	Polyadenylation factor subunit 2 n=2 Tax=Mytilus g...	[more]
A0A3P7P4F8_DIBLA	3.710e-43	58.82	Uncharacterized protein (Fragment) n=1 Tax=Dibothr...	[more]
A0A8K0KG33_LADFU	4.170e-43	56.82	Uncharacterized protein n=1 Tax=Ladona fulva TaxID...	[more]
A0A1J1IDJ2_9DIPT	5.110e-43	61.98	CLUMA_CG011202, isoform A n=1 Tax=Clunio marinus T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 43..82 e-value: 1.1E-6 score: 38.2 coord: 84..124 e-value: 2.0 score: 15.1 coord: 1..40 e-value: 4.8 score: 12.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 46..81 e-value: 1.2E-4 score: 22.8 coord: 88..121 e-value: 8.7E-4 score: 20.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 50..91 score: 12.246
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 2..126 e-value: 1.2E-21 score: 79.0
None	No IPR available	PANTHER	PTHR22836	WD40 REPEAT PROTEIN	coord: 2..121
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 7..121 score: 15.505
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 9..121

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig63797	contig	H-elongata_contig63797:1162..3301 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig63797.13954.1	mRNA_H-elongata_contig63797.13954.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig63797 1162..3301 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig63797.13954.1 ID=prot_H-elongata_contig63797.13954.1|Name=mRNA_H-elongata_contig63797.13954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
QWVKTSTNKQRCPVFCLAWTPEGVTRCITGNSSGEFTLWKDGAFNFVTIL
QAHTSAVRSMAWSRSGSILISGDHSGIIKYWQTSMTEVNHIKAHGTNPIR
GLSFGPTDSKFASCSDDSTVRATINSSII*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR036322	WD40_repeat_dom_sf