prot_H-elongata_contig63763.13947.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63763.13947.1
Unique Nameprot_H-elongata_contig63763.13947.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Match: A0A2J6SY04_9HELO (WSC-domain-containing protein n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6SY04_9HELO)

HSP 1 Score: 48.5 bits (114), Expect = 2.870e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 0
Query:    1 QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYEFTS 44
            QC+C +    P++LG A CSM+CTG+SA+ CGG   +S++  T+
Sbjct: 1472 QCYCSNSMASPSALGQAGCSMACTGNSAETCGGSSRISMFNNTA 1515          
BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Match: A0A1Y1U9D4_9TREE (Glycosyl hydrolase family 71-domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1U9D4_9TREE)

HSP 1 Score: 47.4 bits (111), Expect = 7.360e-5
Identity = 19/41 (46.34%), Postives = 24/41 (58.54%), Query Frame = 0
Query:    1 QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYE 41
            QCFCG+      +     CSM CTGD+ + CGG W L L+E
Sbjct:  340 QCFCGNSVPTAITYNDTLCSMPCTGDATEMCGGEWGLDLFE 380          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63763.13947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2J6SY04_9HELO2.870e-545.45WSC-domain-containing protein n=1 Tax=Hyaloscypha ... [more]
A0A1Y1U9D4_9TREE7.360e-546.34Glycosyl hydrolase family 71-domain-containing pro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002889Carbohydrate-binding WSCPROSITEPS51212WSCcoord: 1..43
score: 7.423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63763contigH-elongata_contig63763:868..1002 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63763.13947.1mRNA_H-elongata_contig63763.13947.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63763 868..1002 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63763.13947.1 ID=prot_H-elongata_contig63763.13947.1|Name=mRNA_H-elongata_contig63763.13947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QCFCGDVTDDPTSLGSATCSMSCTGDSAQNCGGVWALSLYEFTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002889WSC_carb-bd