prot_H-elongata_contig6371.13941.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6371.13941.1
Unique Nameprot_H-elongata_contig6371.13941.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.000e-26
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+Y L+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  EFP  D+G+ +WY GCA   +   G  K++Q A++DS++ RF
Sbjct:    1 MSGKVVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRF 124          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.430e-26
Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:    1 MSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 124          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.590e-25
Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:  350 MSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELF-ASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 473          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.310e-25
Identity = 51/126 (40.48%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     +  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:   70 MSGKVVKIERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELF-ASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYIESMLKRF 193          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JFS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS2_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.920e-25
Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W +  +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V        ++F A L  +FP  D+G+ +WY GCAF      G  K++Q A+++S++ RF
Sbjct:  243 MSGKVVKVERALYGLKQSGREWGVEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGAREELF-ASLNKKFPVKDLGECTWYDGCAFAMGVENGITKLSQTAYIESMLKRF 366          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JNU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.090e-25
Identity = 52/126 (41.27%), Postives = 82/126 (65.08%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:  395 MSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 518          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5K738_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K738_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.190e-25
Identity = 49/126 (38.89%), Postives = 80/126 (63.49%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YG + +GR+W    +  L++  G EQ + DPCV+RKVVD EV  +  ++VDD+ V     E  ++ +A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:   70 MSGKVVKVERALYGPKQSGREWGFEAADALVEN-GYEQCRVDPCVFRKVVDREVVGLIVIYVDDIFVAADEGER-EVLFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 193          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 4.240e-25
Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+  GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:  637 MSGKVVKVERALYGLKQGGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 760          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.280e-25
Identity = 51/126 (40.48%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+YGL+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP   +G+ +WY GCA   +   G  K++Q A+++S++ RF
Sbjct:  119 MSGKVVKVERALYGLKQSGREWGFEAAGALIEN-GYEQCRVDPCVFRKVVDGEVVSLIVIYVDDILVVADEGEREELF-ASLNKKFPVESLGEYTWYDGCAIAMDVENGITKLSQTAYIESMLKRF 242          
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.820e-25
Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 0
Query:    1 MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVVDGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGCAFERNKMEGAVKMTQIAFVDSLVHRF 126
            MSG+VV ++ A+Y L+ +GR+W    +  L++  G EQ + DPCV+RKVVDGEV  +  ++VDD+ V     E  ++F A L  +FP  D+G+ +WY GCA   +   G  K++Q A+V+S++ RF
Sbjct:    1 MSGKVVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELF-ASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRF 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6371.13941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW89_9PHAE1.000e-2642.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.430e-2641.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.590e-2541.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE2.310e-2540.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFS2_9PHAE2.920e-2541.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNU5_9PHAE3.090e-2541.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K738_9PHAE3.190e-2538.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE4.240e-2541.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE6.280e-2540.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE7.820e-2541.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 3..125
e-value: 7.9E-17
score: 61.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6371contigH-elongata_contig6371:5711..6088 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6371.13941.1mRNA_H-elongata_contig6371.13941.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6371 5711..6388 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6371.13941.1 ID=prot_H-elongata_contig6371.13941.1|Name=mRNA_H-elongata_contig6371.13941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MSGEVVLLQSAVYGLRHAGRQWNLRLSRVLLQKTGMEQSKSDPCVYRKVV
DGEVTLIPCVHVDDLDVTTKAKETFDIFYAKLKGEFPANDIGDLSWYLGC
AFERNKMEGAVKMTQIAFVDSLVHRF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2