prot_H-elongata_contig63708.13940.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63708.13940.1
Unique Nameprot_H-elongata_contig63708.13940.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length666
Homology
BLAST of mRNA_H-elongata_contig63708.13940.1 vs. uniprot
Match: D7FXP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP6_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 5.270e-56
Identity = 257/791 (32.49%), Postives = 319/791 (40.33%), Query Frame = 0
Query:    1 RTVFLPPVKKKRVCGAWSGCGRRLAISSGGEIRVYD--CDGGS------GGRNEGCRSKRDVRPRP-LTDTSPNQGSALI-EARSTASDFGARNGREVQEAAVKAGNPTAMERLLAGGYSTTEDVAGS----FRTVLLVEAAMQEDGGLSLPGSSPPCGSPFPPPSP---------------------QPPLRGSRSPQWLTSSLPEGKRPLT-------SSNQSALRLVGDMRSMCSAGPRAFFGSADGGLGLESLLGGGGEDGKRLGTKENLLPGSTYDVGAARTASERLADADAFNLDANSSVSSTNAPATVISRNSPHSGRRGGGGGGFRHVLPGENWLAGSLRL-----------------------LSLDVQAEPSVGAGHRSESVAAVSRPAFMVPSSPSTSASLLAPDSEVVDLR--------------------GKLGNRL---GSRESDVDTTHPLFRISLGAGLDTPPXXX---------RSGGREARMDRASAAAIAAAPVHAAGRDFESCASRGDAVAGTASGRPLLLRVAWPNAAVNDKRWEIDGGNDGAE-VQVLASLPPALSSPDLLAASDDGCVVAVGSHACGLVACFWIPLGPATVETVSATDARELLMLGAQASRLPAGSSPAGAGGRQNEVGIGSHRRRSRRQAVPLCTLRLPAGHRAKGLTF---------------VDPVAQGR-----------QMVVLVLAACPSSSNGPDADCTARRSTVPPARGFSSTHRSRSTGGGVSGRVD-AYFRTVLLRFLLPAETQRKGN 666
            R V   PV +KR CGAWSGCGRRLA+SSGGEIRVY    +GGS       G+  G      V   P L    P  G A    A                  A+ +        L+A G +     +G     FRT+L VEAAM   G  S PGSSP  GS    PSP                      PP      P+  +        PL+       +   S+  L+GDMR+MC AG   FFG+  GGLGL+S +                L G     G     +          +D+++   + ++    +S   P + R     GGFRH LPGENWLAGSLR                        L+L V + P      RS + A  S PA     + S S+ L +    VVD R                    GKLGN     G+      +THPLFR+SL  G D                SG R  RM  AS     AA     GR  +S   R          RP L+RV+  +           GG DG   V  L SLP  L+SPDLLA+S+DG +VAVGSHAC LVAC+ +   PA+  T S                LP GS    +G R+        R+R  R+AVPLCTLRLP G+RAKGL                 V+  A G            ++VVLVLA C  SS     D T   +T  P    SS        G  SGR + + +RT LLRF LPA     GN
Sbjct:  272 RVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGGSRRPISTAGQARGGVESETVDDAPGLQPAKPRSGWASPGSAXXXXXXXXXXXXXXXXXXALPSATVAREGGLVAEGETGLTGCSGGASRDFRTILCVEAAMG-GGVFSSPGSSP--GSTRSSPSPLADGGGGARSGGDGTGLTRIGAPPGTRKSRPERASDGTHSSVGPLSPPPXXXXAGVSSSRLLIGDMRAMCPAGSLTFFGTTGGGLGLDSAIA----------ASAPTLSGEPLFAGGGGQTTHVGEGLLCAVVDSSNKACAASSSIDTVSAEKPATRR-----GGFRHSLPGENWLAGSLRPTSRTLLPNSPRRRGRDSGSPESPLALPVGSSPVAPLEERSSTAAEESVPAGESRPTSSESSLLRSTIPAVVDRRXXXXXXXXXXXXXXXXXXXXGKLGNGADGGGAAGMPTPSTHPLFRLSLPGGEDAASSPAVGSSSISLRDSGNRLGRMGTASGRNSPAA-----GRTTDSTPGR----------RPCLVRVSCRS-----------GGGDGVVGVATLTSLPSELASPDLLASSEDGRIVAVGSHACDLVACYRLESHPASPATESC---------------LPGGSGGCESGTRR--------RKRRHRRAVPLCTLRLPTGYRAKGLMLSRERQARGESAATPGVNSSASGEGATAEDGVMADEVVVLVLAGCAVSS----VDATIGATTPRPDMNESSFAAESHWRGSNSGRPEESSYRTTLLRFSLPAAPATTGN 991          
BLAST of mRNA_H-elongata_contig63708.13940.1 vs. uniprot
Match: A0A6H5KXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC0_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.480e-47
Identity = 257/834 (30.82%), Postives = 320/834 (38.37%), Query Frame = 0
Query:    1 RTVFLPPVKKKRVCGAWSGCGRRLAISSGGEIRVYDCDGGSGGRNEGCRSKRDVRPRPLTDTSPNQGSALIEARSTASDFGARNGREVQEAAVKAGNPTAMERLLAGG----------------------------------------------------------------YSTTEDVAGS---FRTVLLVEAAMQEDGGLSLPGSSPPCGSPFPPPSPQPPLR----GSRSPQ-----WLTSSLPEGKR---------------PL--------TSSNQSALRLVGDMRSMCSAGPRAFFGSADGGLGLESLLGGGGEDGKRLGTKENLLPGSTYDVGAARTASERLADADAFNLDANSSVSSTNAPATVISRNSPHSGRRGGGGGGFRHVLPGENWLAGSLRL-----------------------LSLDVQAEPSVGAGHRSESVAAVSRPAFMVPSSPSTSASLLA---PD--------SEVVDLRGKLGNRL---GSRESDVDTTHPLFRISLGAGLD--TPPXXXRSGG--REARMDRASAAAIAAAPVHAAGRDFESCASRGDAVAGTASGRPLLLRVAWPNAAVNDKRWEIDGGNDGAE-VQVLASLPPALSSPDLLAASDDGCVVAVGSHACGLVACFWIPLGPATVETVSATDARELLMLGAQASRLPAGSSPAGAGGRQNEVGIGSHRRRSRRQAVPLCTLRLPAGHRAKGLTF---------------VDPVAQGR-----------QMVVLVLAACPSSSNGPDADCTARRSTVPPARGFSSTHRSRSTGGGVSGRVD-AYFRTVLLRFLLPAETQRKGN 666
            R V   PV +KR CGAWSGCGRRLA+SSGGEIRVY              S+ + R RP++     +G    E   T  D  +    + +      G+  A                                                                        Y  T    G+   FRTVL VEAAM   G  S PGSSP  G      SP  PL     G+RS         T +LP  +R               PL        T+   S+  L+GDMR+MC AG  AFFG+  GGLGL+S +      G  L  +  L  G              + D+      A+SS+ + +A      R            GGFRH LPGENWLAGSLR                        L+L V + P      RS   A  S P    P   S+ +SLL    PD         EVVDLRGKLGN     G+      +THPLF +SL  G D  + P    SG   R++                      +S + R          RP L+RV+  +           GG DG   V  LA LP  L+SPDLLAAS+DG +VAVGSHAC LVAC+ +   PA+  T S                LP        GG +    +   R+R  R+AVPLCTLRLP G+RAKGL                 V   A G            ++V+LVLA C  +S     D T   +T  P    SS        G  SGR + + +RT LLRF LPA     GN
Sbjct:  296 RVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDP-----------SEGESR-RPISAAGQARGGVESE---TVGDAPSLQPAKTRSGWASPGSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEXXXXXXXARYRLTSCSGGASREFRTVLCVEAAMG-GGVFSSPGSSP--GGTL---SPLSPLADGGGGARSGGDGTGLTQTDALPGTRRSRPERDSDGAHSSVGPLSPPPPAAATAGVSSSRLLIGDMRAMCPAGSLAFFGTTGGGLGLDSAI---AASGPTLSGEPLLAGGGGQTTHVGEGLLGAVVDSSNKACAASSSIDTISADKLATRR------------GGFRHALPGENWLAGSLRPTSRTLLPNSPRRRSRDFGSSESPLALPVGSSPVAPLEERSSKAAEESVP-IGEPRPTSSESSLLRSTIPDVVGRRSTTPEVVDLRGKLGNWADGGGAAGMPTASTHPLFCLSLPGGEDAASSPAVGSSGISLRDSXXXXXXXXXXXXXXXXXXXXTTDSTSGR----------RPCLVRVSCRS-----------GGVDGVVGVATLAFLPSELASPDLLAASEDGRIVAVGSHACDLVACYRLESHPASPATESC---------------LP--------GGGRGSESVTRRRKRRHRRAVPLCTLRLPTGYRAKGLMLSREKQARGESAATPGVHSSASGEGSTAEHGVTADEVVILVLAGCAVAS----VDATIGTTTPRPDMNESSFAAESHWRGSSSGRPEESSYRTTLLRFSLPASPATTGN 1044          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63708.13940.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXP6_ECTSI5.270e-5632.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXC0_9PHAE3.480e-4730.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63708contigH-elongata_contig63708:1223..3220 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63708.13940.1mRNA_H-elongata_contig63708.13940.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63708 1223..3220 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63708.13940.1 ID=prot_H-elongata_contig63708.13940.1|Name=mRNA_H-elongata_contig63708.13940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=666bp
RTVFLPPVKKKRVCGAWSGCGRRLAISSGGEIRVYDCDGGSGGRNEGCRS
KRDVRPRPLTDTSPNQGSALIEARSTASDFGARNGREVQEAAVKAGNPTA
MERLLAGGYSTTEDVAGSFRTVLLVEAAMQEDGGLSLPGSSPPCGSPFPP
PSPQPPLRGSRSPQWLTSSLPEGKRPLTSSNQSALRLVGDMRSMCSAGPR
AFFGSADGGLGLESLLGGGGEDGKRLGTKENLLPGSTYDVGAARTASERL
ADADAFNLDANSSVSSTNAPATVISRNSPHSGRRGGGGGGFRHVLPGENW
LAGSLRLLSLDVQAEPSVGAGHRSESVAAVSRPAFMVPSSPSTSASLLAP
DSEVVDLRGKLGNRLGSRESDVDTTHPLFRISLGAGLDTPPPPPRSGGRE
ARMDRASAAAIAAAPVHAAGRDFESCASRGDAVAGTASGRPLLLRVAWPN
AAVNDKRWEIDGGNDGAEVQVLASLPPALSSPDLLAASDDGCVVAVGSHA
CGLVACFWIPLGPATVETVSATDARELLMLGAQASRLPAGSSPAGAGGRQ
NEVGIGSHRRRSRRQAVPLCTLRLPAGHRAKGLTFVDPVAQGRQMVVLVL
AACPSSSNGPDADCTARRSTVPPARGFSSTHRSRSTGGGVSGRVDAYFRT
VLLRFLLPAETQRKGN
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