prot_H-elongata_contig63625.13937.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63625.13937.1
Unique Nameprot_H-elongata_contig63625.13937.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length131
Homology
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BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 8.310e-41
Identity = 75/128 (58.59%), Postives = 91/128 (71.09%), Query Frame = 0 
Query:    4 LDALDYFRRIRELGTYPPSQLCSLLVQLLASEDLLEEADETFADVLSRGVLPTEACATMMIRLRVQRGKIEEAMEILAMMEGRAYRERYRRPRFRSYQPVIRELFRRGNMDGVMKLWKHMAWHNILPK 131
            L+AL++F+RIR LG YPP  LCSLLVQLLA+E +LEEA+E FAD+L  G+L                      ME+LAMMEGR Y++++ RPRFRSYQPVI EL RRG MDGVM+LWKHM WH+I PK
Sbjct:  285 LEALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPK 412
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BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.590e-24
Identity = 46/63 (73.02%), Postives = 55/63 (87.30%), Query Frame = 0 
Query:   69 QRGKIEEAMEILAMMEGRAYRERYRRPRFRSYQPVIRELFRRGNMDGVMKLWKHMAWHNILPK 131
            QRGK+ EAME+LAMMEGR Y++++ RPRFRSYQPVI EL RRG MDGVM+LW+HM WH+I PK
Sbjct:   10 QRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPK 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63625.13937.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNA1_ECTSI8.310e-4158.59PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE2.590e-2473.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 34..129
e-value: 5.3E-11
score: 42.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..131
e-value: 8.3E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 6..130

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63625contigH-elongata_contig63625:1447..2691 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63625.13937.1mRNA_H-elongata_contig63625.13937.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63625 1432..2691 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63625.13937.1 ID=prot_H-elongata_contig63625.13937.1|Name=mRNA_H-elongata_contig63625.13937.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MRRLDALDYFRRIRELGTYPPSQLCSLLVQLLASEDLLEEADETFADVLS
RGVLPTEACATMMIRLRVQRGKIEEAMEILAMMEGRAYRERYRRPRFRSY
QPVIRELFRRGNMDGVMKLWKHMAWHNILPK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf