prot_H-elongata_contig63616.13936.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63616.13936.1
Unique Nameprot_H-elongata_contig63616.13936.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length359
Homology
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BLAST of mRNA_H-elongata_contig63616.13936.1 vs. uniprot
Match: D7FNV0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.010e-42
Identity = 182/407 (44.72%), Postives = 213/407 (52.33%), Query Frame = 0 
Query:    2 VSSWTPSLEPRYVENHHAAPSAASEATAKT---LPRGGEERREKEA-------QQATRGSDFSNLYMPTPERATSSGQLYPALVPTAPFSEAVTTNVNQRGMEQRTEERAQGSTQARLNATIPRSASTLDARTAASGIATAAAGLSAMVM-----------------------AGERRDGVAVRAAAGNTSAEVVEELLSENERLRFIIQDMSDELEKVSLQLQGKGETARGSDVSVAPTRTAGGAAASSQPRQQSAAPRPLSAMS------QLLG-YPGAEAEASRXXXXXXXXXXXXXXXXXXXXXTLR----------RGTFVHFKCENCPQWLRVPGHAQLVFCPTCSHTSQMSSNSTIXXXXXXXXXXXXXXXXXXXXXTRNNAAGEAEASWLGYLKSIIAS 358
            VS+W P  E RYVE H A P+A+  A A+    LP+  +E +E+E         QATR SDFS+LY   P R  S+GQLYP L P+APFS+ +   +                      A          A +AA G A    G +A                          A ER   V       ++S EVVEELLSENERLR IIQ+MSDELE+ S+   G G TA               AA ++Q RQ SAA     A +      +LLG YPGA+AEA+R  XXXXXXXXX            +           GTFVHFKCENCPQWL+VP HAQLV+CPTC HTSQM+S STI XXXXXXXXXXXXXXXXXXXX      GE E  WLGY KSIIAS
Sbjct:   78 VSTWMPMAEHRYVETHVAPPTASDVAAARARGELPQLLQEGQEQEGGQLQEQQAQATRVSDFSSLYSAAPHREESTGQLYPVLAPSAPFSDTMRIPMPPP-------------------AVXXXXXXXXRAPSAAFGAAVRDDGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXARERSQDV-------SSSGEVVEELLSENERLRAIIQEMSDELERGSVPAIG-GSTA---------------AAGATQGRQSSAARAXXXAATSATPTERLLGRYPGAQAEAARRRXXXXXXXXXGHRQDGGARPQTQVQPQVQAAVGAGTFVHFKCENCPQWLKVPVHAQLVYCPTCGHTSQMTSASTIHXXXXXXXXXXXXXXXXXXXXXXXX--GEEEVGWLGYFKSIIAS 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63616.13936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNV0_ECTSI3.010e-4244.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..183
NoneNo IPR availableCOILSCoilCoilcoord: 241..270

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63616contigH-elongata_contig63616:301..2875 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63616.13936.1mRNA_H-elongata_contig63616.13936.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63616 280..3480 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63616.13936.1 ID=prot_H-elongata_contig63616.13936.1|Name=mRNA_H-elongata_contig63616.13936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MVSSWTPSLEPRYVENHHAAPSAASEATAKTLPRGGEERREKEAQQATRG
SDFSNLYMPTPERATSSGQLYPALVPTAPFSEAVTTNVNQRGMEQRTEER
AQGSTQARLNATIPRSASTLDARTAASGIATAAAGLSAMVMAGERRDGVA
VRAAAGNTSAEVVEELLSENERLRFIIQDMSDELEKVSLQLQGKGETARG
SDVSVAPTRTAGGAAASSQPRQQSAAPRPLSAMSQLLGYPGAEAEASRRR
QEENQQQQQQQQQQQQQQQTLRRGTFVHFKCENCPQWLRVPGHAQLVFCP
TCSHTSQMSSNSTIYYPPNNEIPSAARRSSGGSESTRNNAAGEAEASWLG
YLKSIIAS*
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