prot_H-elongata_contig63160.13891.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63160.13891.1
Unique Nameprot_H-elongata_contig63160.13891.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length92
Homology
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.200e-47
Identity = 78/88 (88.64%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    5 PRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            P   + +VGGVTILLDCGWDIHFDTALLEPLR VVKR+DLVL+SHPDLEHLG LPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR
Sbjct:  144 PVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 231          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 3.680e-32
Identity = 61/88 (69.32%), Postives = 69/88 (78.41%), Query Frame = 0
Query:    5 PRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            P   + +VG VTILLDCGWDI FD +LL PL SVV RVDLVL+SH DLEHLG LPYA GKLG++A V+ATLP  KMGQM VYDA+  R
Sbjct:   66 PVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMR 153          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A3R6Y0V8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y0V8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.490e-30
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC)

HSP 1 Score: 120 bits (301), Expect = 9.870e-30
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 0
Query:    9 VTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            V  + G  ILLDCGW+  FD  LLEPL  V   VD VL+SHPD EHLGALPYAFGKLGMR KVYATLPV KMG M +YD ++SR
Sbjct:   27 VLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSR 110          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A6A5AL47_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AL47_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.450e-29
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A8K1FDQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDQ3_PYTOL)

HSP 1 Score: 117 bits (293), Expect = 1.220e-28
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 0
Query:    9 VTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            V +V  V ILLDCGW   +D  LL+PL  VV+RVDLVL+SHPDL H+GALPYA GKLG+ A +Y TLPV +MGQ+A+Y+AY+++
Sbjct: 1324 VLEVDDVCILLDCGWTDEYDEELLKPLARVVERVDLVLISHPDLAHMGALPYAIGKLGLNAPIYGTLPVHRMGQIALYEAYLAK 1407          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A425C362_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425C362_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.010e-28
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            +V  + ILLDCGW   FD ALLEPL  V+ +VDLVL+SHPDL H+GALPYA G LG++A VY TLPV++MG++ +Y+AY +R
Sbjct:   24 EVDDIGILLDCGWTDDFDVALLEPLAKVIDKVDLVLISHPDLAHMGALPYAMGTLGLKAPVYVTLPVYRMGEIVLYEAYQAR 105          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: M2XHI7_GALSU (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHI7_GALSU)

HSP 1 Score: 116 bits (291), Expect = 2.180e-28
Identity = 52/82 (63.41%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
            ++    ILLDCGW+  F+  LLEPLR +  RVD VL+SHPDL HLGALPYA  KLG+RA  YATLPVW+MGQ+ +YDA+ SR
Sbjct:   25 EIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVLISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSR 106          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A0A090N2Q4_OSTTA (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090N2Q4_OSTTA)

HSP 1 Score: 116 bits (291), Expect = 2.210e-28
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
             + G  ILLDCGW   FD  +L+PL ++ K VD VL+SHPD  HLGALPYAFGKLGM  KVYATLPV KMGQM +YD +++R
Sbjct:   44 SIDGCNILLDCGWTDAFDVEMLKPLEAIAKDVDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTR 125          
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Match: A4RR19_OSTLU (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RR19_OSTLU)

HSP 1 Score: 116 bits (290), Expect = 2.940e-28
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0
Query:   11 QVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHPDLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR 92
             + G  ILLDCGW+  FD  +L+PL ++  +VD VL+SHPD  HLGALPYAFGKLGM  KVYATLPV KMGQM +YD +++R
Sbjct:    6 SIDGCNILLDCGWNDKFDVDMLKPLAAIAPKVDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTR 87          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63160.13891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA4_ECTSI5.200e-4788.64Cleavage and polyadenylation specificity factor su... [more]
A0A836CFV8_9STRA3.680e-3269.32Cleavage and polyadenylation specificity factor su... [more]
A0A3R6Y0V8_9STRA3.490e-3060.98Cleavage and polyadenylation specificity factor su... [more]
C1FDL7_MICCC9.870e-3067.86Cleavage and polyadenylation specificity factor su... [more]
A0A6A5AL47_9STRA7.450e-2960.98Cleavage and polyadenylation specificity factor su... [more]
A0A8K1FDQ3_PYTOL1.220e-2861.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A425C362_9STRA2.010e-2860.98Cleavage and polyadenylation specificity factor su... [more]
M2XHI7_GALSU2.180e-2863.41Cleavage and polyadenylation specificity factor su... [more]
A0A090N2Q4_OSTTA2.210e-2863.41Cleavage and polyadenylation specificity factor su... [more]
A4RR19_OSTLU2.940e-2862.20Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001279Metallo-beta-lactamasePFAMPF16661Lactamase_B_6coord: 11..91
e-value: 2.2E-24
score: 86.0
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeGENE3D3.60.15.10coord: 1..92
e-value: 9.0E-28
score: 98.9
IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeSUPERFAMILY56281Metallo-hydrolase/oxidoreductasecoord: 10..89
IPR027075Cleavage and polyadenylation specificity factor subunit 2PANTHERPTHR45922FAMILY NOT NAMEDcoord: 11..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63160contigH-elongata_contig63160:147..1248 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63160.13891.1mRNA_H-elongata_contig63160.13891.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63160 147..1248 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63160.13891.1 ID=prot_H-elongata_contig63160.13891.1|Name=mRNA_H-elongata_contig63160.13891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
KYHHPRRCVTQVGGVTILLDCGWDIHFDTALLEPLRSVVKRVDLVLVSHP
DLEHLGALPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001279Metallo-B-lactamas
IPR036866RibonucZ/Hydroxyglut_hydro
IPR027075CPSF2