prot_H-elongata_contig63123.13889.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig63123.13889.1
Unique Nameprot_H-elongata_contig63123.13889.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length51
Homology
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: A0A6H5JFE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.620e-17
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0
Query:    2 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 49
            L RAAGANHV I+ +LL+AGAPVD  DRCLRTPLHWAAISG++DATQ+
Sbjct:   48 LHRAAGANHVGIILYLLQAGAPVDTADRCLRTPLHWAAISGHLDATQL 95          
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.760e-17
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 0
Query:    2 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 49
            L RAAGANHV I+ +LL+AGAPV+  DRCLRTPLHWAAISG++DATQ+
Sbjct:   41 LHRAAGANHVGIIIYLLQAGAPVNTADRCLRTPLHWAAISGHLDATQL 88          
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.310e-13
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    2 LRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQV 49
            L RAAG NHVEIM++L+E GAPVD  D+  RT LHWA ISG+ +AT +
Sbjct:   41 LHRAAGGNHVEIMNYLMEKGAPVDQTDKSGRTALHWAVISGHKEATDI 88          
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Match: UPI001EEC167F (26S proteasome non-ATPase regulatory subunit 10-like n=1 Tax=Daphnia pulicaria TaxID=35523 RepID=UPI001EEC167F)

HSP 1 Score: 47.4 bits (111), Expect = 9.520e-5
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0
Query:    1 PLRRAAGA-NHVEIMDFLL-EAGAPVDCVDRCLRTPLHWAAISGNIDATQ 48
            PL  A G  N  EIMD LL      VDCVD+C RT LHWAA++ N+ A +
Sbjct:  150 PLHVAVGGRNDNEIMDLLLAHPKVNVDCVDKCGRTVLHWAAMTSNVVAVK 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig63123.13889.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFE8_9PHAE5.620e-1777.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW9_ECTSI5.760e-1775.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSR0_9PHAE3.310e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EEC167F9.520e-552.0026S proteasome non-ATPase regulatory subunit 10-li... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13637Ank_4coord: 1..48
e-value: 4.0E-10
score: 40.0
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 1..49
e-value: 6.5E-13
score: 50.7
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 1..47
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 1..50
score: 15.963
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 1..29
score: 10.633

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig63123contigH-elongata_contig63123:2728..2880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig63123.13889.1mRNA_H-elongata_contig63123.13889.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig63123 2728..2880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig63123.13889.1 ID=prot_H-elongata_contig63123.13889.1|Name=mRNA_H-elongata_contig63123.13889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
PLRRAAGANHVEIMDFLLEAGAPVDCVDRCLRTPLHWAAISGNIDATQVR
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt