prot_H-elongata_contig62893.13867.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62893.13867.1
Unique Nameprot_H-elongata_contig62893.13867.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length126
Homology
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BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.420e-37
Identity = 81/131 (61.83%), Postives = 96/131 (73.28%), Query Frame = 0 
Query:    1 LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQAWKGLIDCLERAG--RVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEEALNALQRHMENPEAVAAVAG---GADTAA 126
            L D QTLYAVLV++G+A LA  DL AA+ SFRRA +S+P +PQAWKGLIDCLER+G  +V  LPECL+ AA IAE KGN  RA  L LR   VL  LGR EEAL A+ RH+++PEA+AA AG   G  TAA
Sbjct:   37 LNDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQAWKGLIDCLERSGAEKVGALPECLSRAAEIAEGKGNLARARGLRLRLGTVLDHLGRKEEALEAVLRHLDSPEAMAAAAGDGSGISTAA 167
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BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Match: A0A6H5JAD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAD5_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.360e-34
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 0 
Query:    1 LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQ------------AWKGLIDCLERAG--RVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEEALNALQRHMENPEAVAAVAG---GADTAA 126
            L+D QTLYAVLV++G+A LA  DL AA+ SFRRA +S+P +PQ            AWKGLIDCLER+G  +V  LPECL+ AA IAE KGN  RA  L LR   VL  LGR EEAL A+ RH+++P+A+AA AG   G  TAA
Sbjct:   37 LKDAQTLYAVLVTSGLAALASQDLTAAESSFRRAADSIPDAPQPSYIFIPNPTPKAWKGLIDCLERSGAEKVAALPECLSRAAEIAEGKGNFARARGLRLRLGTVLDHLGRKEEALEAVLRHVDSPQAMAATAGDGSGVPTAA 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62893.13867.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G059_ECTSI4.420e-3761.83Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A6H5JAD5_9PHAE5.360e-3455.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 9..123
e-value: 7.6E-11
score: 43.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..110
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..126
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62893contigH-elongata_contig62893:711..1088 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62893.13867.1mRNA_H-elongata_contig62893.13867.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62893 711..1088 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62893.13867.1 ID=prot_H-elongata_contig62893.13867.1|Name=mRNA_H-elongata_contig62893.13867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
LQDDQTLYAVLVSAGMAGLACNDLPAAQRSFRRATESLPYSPQAWKGLID
CLERAGRVEDLPECLAHAAGIAESKGNHGRALTLLLRQAEVLGDLGRPEE
ALNALQRHMENPEAVAAVAGGADTAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf