prot_H-elongata_contig62714.13851.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62714.13851.1
Unique Nameprot_H-elongata_contig62714.13851.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length120
Homology
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BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Match: D7FHB0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHB0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 5.910e-22
Identity = 62/134 (46.27%), Postives = 75/134 (55.97%), Query Frame = 0 
Query:    1 YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQPNVNVQRIIARNGCNV-----------------NNGQKKRKKITIRSGAN----------STASSAIELVEATGRFFSRFYRDSK 107
            YIPF SLG+G DGSAGAL+FRR+L+AARLGIPAD MPD ACLVGNDWIQP  +V RII ++                     N G         R G N          + ++SA  LVEAT R+ S F R ++
Sbjct:  232 YIPFWSLGVGADGSAGALVFRRTLVAARLGIPADWMPDLACLVGNDWIQPENHVHRIIMQSAAXXXXXXXXXXXXXXXXXAHNAGALASSSAPWRRGCNGNGISSSNGLTVSASAKHLVEATARYLSEFLRHTQ 365
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BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Match: A0A6H5KA26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA26_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.260e-20
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0 
Query:    1 YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQPNVNVQR 56
            YIPF SLG+G DGSAGAL+FRR+L+AARLGIPAD MPD ACLVGNDWIQP  +V R
Sbjct:  200 YIPFWSLGVGADGSAGALVFRRTLVAARLGIPADWMPDLACLVGNDWIQPENHVHR 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62714.13851.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHB0_ECTSI5.910e-2246.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KA26_9PHAE6.260e-2078.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62714contigH-elongata_contig62714:1683..3296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62714.13851.1mRNA_H-elongata_contig62714.13851.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62714 1683..3296 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62714.13851.1 ID=prot_H-elongata_contig62714.13851.1|Name=mRNA_H-elongata_contig62714.13851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
YIPFGSLGLGEDGSAGALIFRRSLLAARLGIPADRMPDFACLVGNDWIQP
NVNVQRIIARNGCNVNNGQKKRKKITIRSGANSTASSAIELVEATGRFFS
RFYRDSKPLQGKRPSSPVRA
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