prot_H-elongata_contig62595.13832.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig62595.13832.1
Unique Nameprot_H-elongata_contig62595.13832.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
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BLAST of mRNA_H-elongata_contig62595.13832.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 9.070e-11
Identity = 64/191 (33.51%), Postives = 90/191 (47.12%), Query Frame = 0 
Query:    3 VQLANGQKVVVRNQTRTLQVAIGTPWGSVVIST-AFAIIPGTDSVLILGSKTLREKLGVDVMRSLKGKA--------QGGD-------------------ESSGDMPEDVGSH--AWEPAMFKEVGDEVITRREALMAAVDAALEAGLPSDAETRLRDLLLGPLFDGFHRLLSGDPPARVEPFQVNLKVDA 163
            V+   G+ V V  +T  +++ I T WG VV+   AFA++PGTD V+I+G  TL  KLG+DV  ++   A        +G D                    ++ D P+       A  P M     +E   R +AL  AVD+A +AGL      RLR ++    F+ F R + GDPPA V P  V LK  A
Sbjct:  468 VKTVEGRLVTVTEKTCPVRMTIHTQWGPVVLDPRAFAVMPGTDDVVIIGDPTLT-KLGIDVYEAMAQHALKERDMEVRGVDTPGFHEARRISVSVEAFTQRAAPDPPDAAVERLVARGPDMVMTPAEEEAGRADALDRAVDSAADAGLSPWGLDRLRQVV-DRRFNVFRRGVRGDPPANVPPMTVKLKTGA 656
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig62595.13832.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE9.070e-1133.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig62595contigH-elongata_contig62595:2417..3025 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig62595.13832.1mRNA_H-elongata_contig62595.13832.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig62595 2417..3025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig62595.13832.1 ID=prot_H-elongata_contig62595.13832.1|Name=mRNA_H-elongata_contig62595.13832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
MSVQLANGQKVVVRNQTRTLQVAIGTPWGSVVISTAFAIIPGTDSVLILG
SKTLREKLGVDVMRSLKGKAQGGDESSGDMPEDVGSHAWEPAMFKEVGDE
VITRREALMAAVDAALEAGLPSDAETRLRDLLLGPLFDGFHRLLSGDPPA
RVEPFQVNLKVDADLSK
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