prot_H-elongata_contig61954.13759.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig61954.13759.1
Unique Name	prot_H-elongata_contig61954.13759.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	158

Homology

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: D8LRZ5_ECTSI (DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ5_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 1.080e-85
Identity = 143/153 (93.46%), Postives = 149/153 (97.39%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            +ILGAI+DKA+SAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDP ESEIYIVEGDSAAGSAKQGRDR TQAILPLRGKILNIEKCASE+IYQN ELQALISALGLGIKGNEFDA SLRYHR+V+MTDADVDGSHIRILLLTFFFRYQ
Sbjct:  417 KILGAILDKASSAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPVESEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKCASERIYQNNELQALISALGLGIKGNEFDASSLRYHRIVVMTDADVDGSHIRILLLTFFFRYQ 569

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A835Z3N6_9STRA (DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N6_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.250e-81
Identity = 136/153 (88.89%), Postives = 145/153 (94.77%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            ++L AI+DKA SAQ AAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSE+EIYIVEGDSAAGSAKQGRDR TQAILPLRGKILNIEKCA+EKIYQN ELQALISALGLG+KG +F+ E LRYHR+VIMTDADVDGSHIRILLLTFFFRYQ
Sbjct:  408 KVLAAIIDKATSAQQAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSETEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKCANEKIYQNNELQALISALGLGVKGVDFELEKLRYHRIVIMTDADVDGSHIRILLLTFFFRYQ 560

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A4D9D639_9STRA (DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D639_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.910e-77
Identity = 133/153 (86.93%), Postives = 142/153 (92.81%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            ++LGAIVDKA SAQ AA AAKAARDMVRRKSLL +TVLPGKLADC+SRDP ESEIYIVEGDSAAGSAKQGRDR TQAILPLRGKILNIEK A+EKIYQN ELQALISALGLGIKGNEFD  +LRYHR++IMTDADVDG+HIRILLLTF FRYQ
Sbjct:  468 RVLGAIVDKAMSAQQAAQAAKAARDMVRRKSLLQTTVLPGKLADCSSRDPVESEIYIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIEKAATEKIYQNTELQALISALGLGIKGNEFDPATLRYHRIMIMTDADVDGAHIRILLLTFLFRYQ 620

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A7S2P1J8_9STRA (DNA topoisomerase 2 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1J8_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.660e-77
Identity = 129/152 (84.87%), Postives = 141/152 (92.76%), Query Frame = 0

Query:    2 ILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            IL AIVDKA+ AQ+AA AA+AARDMVRRKSLLTSTVLPGKLADCASR P ESEI+IVEGDSAAGSAKQGRDR+TQAILPLRGKILNIE+ A+EKIYQN ELQ+LISALGLGIKG E D  SLRYHR+VIMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  311 ILNAIVDKASDAQSAAVAARAARDMVRRKSLLTSTVLPGKLADCASRTPEESEIFIVEGDSAAGSAKQGRDRNTQAILPLRGKILNIERAAAEKIYQNNELQSLISALGLGIKGTELDLSSLRYHRIVIMTDADVDGAHIRVLLLTFFYRYQ 462

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: B7G298_PHATC (DNA topoisomerase 2 n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G298_PHATC)

HSP 1 Score: 248 bits (633), Expect = 1.240e-75
Identity = 128/153 (83.66%), Postives = 144/153 (94.12%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            +IL AI +KA+SAQAAAAAAKAARDMVRRK+LLTST+LPGKLADCASRDP ESEI+IVEGDSAAGSAKQGRDR TQAILPLRGKILNIE+ A+E+IYQN ELQ LISALGLG+KG+EFD +SLRY R+VIMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  452 EILDAIYNKASSAQAAAAAAKAARDMVRRKTLLTSTILPGKLADCASRDPEESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERAATERIYQNTELQGLISALGLGVKGSEFDPKSLRYGRIVIMTDADVDGAHIRVLLLTFFYRYQ 604

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A7S2UBQ2_9STRA (DNA topoisomerase 2 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBQ2_9STRA)

HSP 1 Score: 246 bits (627), Expect = 3.380e-74
Identity = 128/152 (84.21%), Postives = 141/152 (92.76%), Query Frame = 0

Query:    2 ILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            IL AI DKA  AQAAAAAA+AARDMVRRK+LLTST+LPGKLADCASRDPSESEI+IVEGDSAAGSAKQGRDR TQAILPLRGKILNIE+ ++E+IYQN ELQ LISALGLG+KG+EFD  +LRY RVVIMTDADVDG+HIR+LLLTFFFRYQ
Sbjct:  520 ILTAIFDKANQAQAAAAAARAARDMVRRKTLLTSTILPGKLADCASRDPSESEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNIERASTERIYQNSELQGLISALGLGVKGSEFDETALRYGRVVIMTDADVDGAHIRVLLLTFFFRYQ 671

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A7S1ZGQ7_9STRA (DNA topoisomerase 2 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZGQ7_9STRA)

HSP 1 Score: 239 bits (609), Expect = 4.010e-74
Identity = 123/152 (80.92%), Postives = 140/152 (92.11%), Query Frame = 0

Query:    2 ILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            IL AI  KA+ AQAAA AA+AARDMVRRK+LLTSTVLPGKLADCASRD S SEI+IVEGDSAAGSAKQGRDR TQAILPLRGKILN+E+ ++E+IYQNGELQ LISALGLG+KG+EFD +SLRY +++IMTDADVDG+HIR+LLLTFFFRYQ
Sbjct:  217 ILDAIYRKASDAQAAAVAARAARDMVRRKTLLTSTVLPGKLADCASRDTSVSEIFIVEGDSAAGSAKQGRDRRTQAILPLRGKILNVERVSAERIYQNGELQGLISALGLGVKGSEFDEKSLRYGKIIIMTDADVDGAHIRVLLLTFFFRYQ 368

[Close]

BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A1Z5JK01_FISSO (DNA topoisomerase 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JK01_FISSO)

HSP 1 Score: 245 bits (626), Expect = 4.720e-74
Identity = 126/153 (82.35%), Postives = 143/153 (93.46%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            +IL AI +KA SAQAAAAAA+AARDMVRRK+LLTSTVLPGKLADCASRDP ESEI+IVEGDSAAGSAKQGR+R  QAILPLRGKILNIE+ A+EKIYQN ELQ+LISALGLG+KG+EFD ESLRY +++IMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  519 EILDAIYEKATSAQAAAAAARAARDMVRRKTLLTSTVLPGKLADCASRDPLESEIFIVEGDSAAGSAKQGRNRQNQAILPLRGKILNIERAAAEKIYQNNELQSLISALGLGVKGSEFDKESLRYGKIIIMTDADVDGAHIRVLLLTFFYRYQ 671

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BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A7S2RLA2_9STRA (DNA gyrase subunit B n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLA2_9STRA)

HSP 1 Score: 244 bits (622), Expect = 6.770e-74
Identity = 127/153 (83.01%), Postives = 137/153 (89.54%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            ++L A+VDKA++AQA     KAARDMVRRKSLLTSTVLPGKLADCASRDP+ SEIYIVEGDSAAGSAKQGRDR TQA+LPLRGKILNIEK A EKIYQN ELQALISALGLG+K  EFD  SLRYH VVIMTDADVDG+HIRILLLTFF+RYQ
Sbjct:  471 KVLSALVDKASAAQAXXXXXKAARDMVRRKSLLTSTVLPGKLADCASRDPATSEIYIVEGDSAAGSAKQGRDRQTQAVLPLRGKILNIEKAAPEKIYQNNELQALISALGLGVKNGEFDLASLRYHSVVIMTDADVDGAHIRILLLTFFYRYQ 623

[Close]

BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Match: A0A7S1BUN0_9STRA (DNA topoisomerase 2 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BUN0_9STRA)

HSP 1 Score: 239 bits (609), Expect = 1.600e-73
Identity = 122/153 (79.74%), Postives = 138/153 (90.20%), Query Frame = 0

Query:    1 QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDPSESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNGELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFFRYQ 153
            ++LG I DKA +AQ+AA AA+AARDMVRRKS+L  +VLPGKLADCASRD S SEI+IVEGDSAAGSAKQGRDR TQAILPLRGKILNIE+ A E+IYQN ELQ LISALGLGIKG+EFD  SLRYHR++IMTDADVDG+HIR+LLLTFF+RYQ
Sbjct:  283 EVLGCIYDKATAAQSAALAARAARDMVRRKSVLAFSVLPGKLADCASRDASASEIFIVEGDSAAGSAKQGRDRKTQAILPLRGKILNIERAAPERIYQNNELQNLISALGLGIKGSEFDLSSLRYHRIIIMTDADVDGAHIRVLLLTFFYRYQ 435

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot

BLAST of mRNA_H-elongata_contig61954.13759.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LRZ5_ECTSI	1.080e-85	93.46	DNA gyrase subunit B n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A835Z3N6_9STRA	1.250e-81	88.89	DNA gyrase subunit B n=1 Tax=Tribonema minus TaxID...	[more]
A0A4D9D639_9STRA	1.910e-77	86.93	DNA gyrase subunit B n=2 Tax=Monodopsidaceae TaxID...	[more]
A0A7S2P1J8_9STRA	2.660e-77	84.87	DNA topoisomerase 2 n=2 Tax=Leptocylindrus danicus...	[more]
B7G298_PHATC	1.240e-75	83.66	DNA topoisomerase 2 n=4 Tax=Phaeodactylum tricornu...	[more]
A0A7S2UBQ2_9STRA	3.380e-74	84.21	DNA topoisomerase 2 n=1 Tax=Attheya septentrionali...	[more]
A0A7S1ZGQ7_9STRA	4.010e-74	80.92	DNA topoisomerase 2 n=2 Tax=Ditylum brightwellii T...	[more]
A0A1Z5JK01_FISSO	4.720e-74	82.35	DNA topoisomerase 2 n=2 Tax=Fistulifera solaris Ta...	[more]
A0A7S2RLA2_9STRA	6.770e-74	83.01	DNA gyrase subunit B n=1 Tax=Rhizochromulina marin...	[more]
A0A7S1BUN0_9STRA	1.600e-73	79.74	DNA topoisomerase 2 n=1 Tax=Corethron hystrix TaxI...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00418	TPI2FAMILY	coord: 122..138 score: 65.49 coord: 140..157 score: 44.38 coord: 55..69 score: 61.54
None	No IPR available	PANTHER	PTHR45866	FAMILY NOT NAMED	coord: 65..153
None	No IPR available	PANTHER	PTHR45866:SF8		coord: 3..65 coord: 65..153
None	No IPR available	PANTHER	PTHR45866	FAMILY NOT NAMED	coord: 3..65
IPR000565	DNA topoisomerase, type IIA, subunit B	PRINTS	PR01159	DNAGYRASEB	coord: 105..114 score: 58.33 coord: 9..29 score: 45.4
IPR001241	DNA topoisomerase, type IIA	SMART	SM00433	topII5	coord: 1..157 e-value: 0.0015 score: -355.5
IPR006171	TOPRIM domain	PFAM	PF01751	Toprim	coord: 54..151 e-value: 2.6E-18 score: 66.1
IPR006171	TOPRIM domain	PROSITE	PS50880	TOPRIM	coord: 53..157 score: 20.312
IPR013759	DNA topoisomerase, type IIA, subunit B, C-terminal	GENE3D	3.40.50.670		coord: 33..157 e-value: 2.7E-57 score: 195.7
IPR018522	DNA topoisomerase, type IIA, conserved site	PROSITE	PS00177	TOPOISOMERASE_II	coord: 57..65
IPR013760	DNA topoisomerase, type IIA-like domain superfamily	SUPERFAMILY	56719	Type II DNA topoisomerase	coord: 29..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig61954	contig	H-elongata_contig61954:881..3500 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig61954.13759.1	mRNA_H-elongata_contig61954.13759.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig61954 881..3500 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig61954.13759.1 ID=prot_H-elongata_contig61954.13759.1|Name=mRNA_H-elongata_contig61954.13759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
QILGAIVDKAASAQAAAAAAKAARDMVRRKSLLTSTVLPGKLADCASRDP
SESEIYIVEGDSAAGSAKQGRDRSTQAILPLRGKILNIEKCASEKIYQNG
ELQALISALGLGIKGNEFDAESLRYHRVVIMTDADVDGSHIRILLLTFFF
RYQVYTI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000565	Topo_IIA_B
IPR001241	Topo_IIA
IPR006171	TOPRIM_domain
IPR013759	Topo_IIA_B_C
IPR018522	TopoIIA_CS
IPR013760	Topo_IIA-like_dom_sf