prot_H-elongata_contig61909.13755.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig61909.13755.1
Unique Name	prot_H-elongata_contig61909.13755.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	174

Homology

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: D7FSA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA5_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.080e-91
Identity = 145/174 (83.33%), Postives = 159/174 (91.38%), Query Frame = 0

Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 174
            QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ      +AFSPFGKVYSIKIMWPRTDEERARKRNCGF+SFWR++DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E HD PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct:  199 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFLSFWRKEDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGHDAPPPDVLDPGLPESLQNLTPEAKASLQKI 366

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 2.710e-90
Identity = 146/174 (83.91%), Postives = 158/174 (90.80%), Query Frame = 0

Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSAEAKASLQQV 174
            QIDTF EEI+GRVD G+SHQ+YSDQTP+SGSMDDGDPTSTNLYLGNLAPTVTEEALQ      +AFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRR+DAVNAKRAM DTD EG+RM+IGWGKPINKLANAVGVETK+E  D PPPDVLDPGLPE LQ L+ EAKASLQ++
Sbjct:  103 QIDTFFEEIKGRVDKGSSHQMYSDQTPSSGSMDDGDPTSTNLYLGNLAPTVTEEALQ------EAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRREDAVNAKRAMMDTDFEGHRMSIGWGKPINKLANAVGVETKIEGDDAPPPDVLDPGLPESLQNLTPEAKASLQKI 270

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2DH44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH44_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.190e-44
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 0

Query:    2 IDTFLEEIRGRVDTGASHQ--------LYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANA 134
            ID FL+EI+ R +     +        L   + P  GS DDGDP +TNLY+GNLAPTVTEE L       + FS FG++YS+KIMWPRT+EERAR+RNCGFVSF +R DA +AK  M D ++EGYR++IGWGK I KL NA
Sbjct:   43 IDDFLDEIKNRQEGKVGDKPSPFGADPLAPPEDPAKGSFDDGDPETTNLYVGNLAPTVTEETLH------ELFSRFGQIYSVKIMWPRTEEERARRRNCGFVSFMQRPDADDAKTTMHDGEIEGYRISIGWGKAIKKLGNA 177

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A836CAC0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAC0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 6.450e-44
Identity = 90/154 (58.44%), Postives = 107/154 (69.48%), Query Frame = 0

Query:    1 QIDTFLEEIRGRVDT-GASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLD 153
            ++D FLEEI+ R +  GA+            S++DGDPTSTNLY+G LAPTVTEE L       + FS FG++YSIKIMWPRTDEERAR+RNCGFVSFWRR DA  A+ AMQ  DVEG  + IGWGKPI+KL  ++G ETKV    D PP  LD
Sbjct:  133 EMDAFLEEIKQRQENPGAAPVGGGGGDFGRASIEDGDPTSTNLYIGFLAPTVTEERLN------EIFSAFGEIYSIKIMWPRTDEERARRRNCGFVSFWRRGDAEAAREAMQGKDVEGMSIQIGWGKPISKLERSIGEETKVS---DLPPQTLD 277

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 147 bits (372), Expect = 1.330e-38
Identity = 69/104 (66.35%), Postives = 84/104 (80.77%), Query Frame = 0

Query:   30 GSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLAN 133
            GS+DDGDP +TNLY+GNLAPT+TEE L       D FS +G++YS+KIMWPRT+EER RKRNCGFVS+ RR DA +AK AM D D+EGYR+++GWGK I KLAN
Sbjct:    2 GSVDDGDPETTNLYVGNLAPTITEETLT------DIFSAYGEIYSVKIMWPRTEEERQRKRNCGFVSYMRRADAEDAKMAMHDQDLEGYRISVGWGKAIKKLAN 99

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.750e-38
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 0

Query:    2 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 170
            ID+FL+EI+ R  +G   +  S      GS DDGDP +TNLY+GNLAP++TEEAL       D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA  AK A+ + +++G+R+++GWGK I KL+   N+V     ++    P    L PGLP+ +  KL    KA+
Sbjct:  178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.470e-38
Identity = 83/173 (47.98%), Postives = 115/173 (66.47%), Query Frame = 0

Query:    2 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLA---NAVGVETKVETHDDPPPDVLDPGLPEPLQ-KLSAEAKAS 170
            ID+FL+EI+ R  +G   +  S      GS DDGDP +TNLY+GNLAP++TEEAL       D F  +G++YS+KIMWPRT+EERARKRNCGFVSF +R+DA  AK A+ + +++G+R+++GWGK I KL+   N+V     ++    P    L PGLP+ +  KL    KA+
Sbjct:  178 IDSFLDEIKTRQSSG---RPPSPDPMARGSYDDGDPDTTNLYVGNLAPSMTEEALN------DIFGKYGEIYSVKIMWPRTEEERARKRNCGFVSFMQREDAEAAKAALNEIELDGHRISVGWGKAIKKLSGSTNSVAAGGFLK----PKASALPPGLPKDMHAKLETVYKAA 337

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: I2CPD2_NANGC (U2-associated protein SR140 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD2_NANGC)

HSP 1 Score: 139 bits (349), Expect = 2.250e-36
Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 0

Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 165
            QID FLEE++   ++G S +   +  P  GS+DDGDP +TNL++GNL+P  TEE L+A       F  FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK  +QD  ++ +R+ IGW K + KLAN +   T V       P  L PGL  P   L A
Sbjct:  158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: W7U2X6_9STRA (U2 snrnp-associated splicing factor putative n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2X6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 8.020e-35
Identity = 79/165 (47.88%), Postives = 104/165 (63.03%), Query Frame = 0

Query:    1 QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPDVLDPGLPEPLQKLSA 165
            QID FLEE++   ++G S +   +  P  GS+DDGDP +TNL++GNL+P  TEE L+A       F  FG+VYS+KIMWPR++EERAR RN GFVSF+ R DA +AK  +QD  ++ +R+ IGW K + KLAN +   T V       P  L PGL  P   L A
Sbjct:  158 QIDAFLEELKQSQESGVSKE---ETCPREGSLDDGDPHTTNLHVGNLSPLTTEERLEA------VFGRFGRVYSVKIMWPRSEEERARGRNTGFVSFYTRADAEDAKDQLQDFLLDDHRIGIGWSKAVKKLAN-LSPSTLVS------PSALPPGLSLPPSALHA 306

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BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Match: A0A484EBR3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBR3_BRELC)

HSP 1 Score: 135 bits (340), Expect = 1.260e-33
Identity = 71/138 (51.45%), Postives = 92/138 (66.67%), Query Frame = 0

Query:    2 IDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPTVTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRRQDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVET 139
            ID FLEE++ R     S    +    T GS D GDP +TNLY+GNLAPTVTEE L+A       F  +G+VYSIKIMWPR++EERARKRNCGFVSF++R+DA +A+  + D  +EG  M +GWGK +   + A+   T
Sbjct:  172 IDDFLEEMKERGPAPVSMDTIA---LTKGSFDTGDPETTNLYVGNLAPTVTEEVLKAE------FGRYGEVYSIKIMWPRSEEERARKRNCGFVSFYKRRDADDARINLDDKQLEGQPMIVGWGKAVKIPSRAISSMT 300

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot

BLAST of mRNA_H-elongata_contig61909.13755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSA5_ECTSI	3.080e-91	83.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JCR2_9PHAE	2.710e-90	83.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2DH44_9STRA	1.190e-44	55.32	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A836CAC0_9STRA	6.450e-44	58.44	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3UX26_HETAK	1.330e-38	66.35	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2WJA8_9STRA	1.750e-38	47.98	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A7S2WJ81_9STRA	2.470e-38	47.98	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
I2CPD2_NANGC	2.250e-36	47.88	U2-associated protein SR140 (Fragment) n=1 Tax=Nan...	[more]
W7U2X6_9STRA	8.020e-35	47.88	U2 snrnp-associated splicing factor putative n=4 T...	[more]
A0A484EBR3_BRELC	1.260e-33	51.45	Uncharacterized protein n=1 Tax=Bremia lactucae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..123 e-value: 4.6E-10 score: 49.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..120 e-value: 9.5E-11 score: 41.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..127 score: 13.464
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 14..136 e-value: 9.4E-20 score: 72.9
None	No IPR available	PANTHER	PTHR23140:SF0	SWAP/SURP DOMAIN-CONTAINING PROTEIN	coord: 2..149
None	No IPR available	PANTHER	PTHR23140	RNA PROCESSING PROTEIN LD23810P	coord: 2..149
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 27..129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig61909	contig	H-elongata_contig61909:1072..3223 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig61909.13755.1	mRNA_H-elongata_contig61909.13755.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig61909 1072..3223 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig61909.13755.1 ID=prot_H-elongata_contig61909.13755.1|Name=mRNA_H-elongata_contig61909.13755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
QIDTFLEEIRGRVDTGASHQLYSDQTPTSGSMDDGDPTSTNLYLGNLAPT
VTEEALQASIPIPDAFSPFGKVYSIKIMWPRTDEERARKRNCGFVSFWRR
QDAVNAKRAMQDTDVEGYRMTIGWGKPINKLANAVGVETKVETHDDPPPD
VLDPGLPEPLQKLSAEAKASLQQV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf