prot_H-elongata_contig6189.13750.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6189.13750.1
Unique Nameprot_H-elongata_contig6189.13750.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.590e-25
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T P I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F  ++  D    VYVD D+A+K ND RSVS  +V+V    V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P      ID++EDN+G
Sbjct:  751 QTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 891          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.700e-25
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T P I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F  ++  D    VYVD D+A+K ND RSVS  +V+V    V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P      ID++EDN+G
Sbjct: 1018 QTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEG 1158          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 8.710e-25
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T   I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F ++   D    VYVD D+A+K  D RSVS  +V V   +V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P +    ID++EDN+G
Sbjct:   49 QTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 189          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JZ67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ67_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.320e-24
Identity = 57/136 (41.91%), Postives = 86/136 (63.24%), Query Frame = 0
Query:    4 PGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKNDDQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
            P ++ AVR V R  H   +R+W A+RK+++YL +T+DLG  + +     ++VYV+  Y + + D RSVS +   VG TVV+  S TQ  V+L + EAEY+A  +G K ALF +AV+ F+ P+     I ++EDNQG
Sbjct:  385 PDVSFAVRAVERHAHALAKRHWDAIRKVLSYLKETRDLGITYQRRSGLGMAVYVNASYVDTE-DNRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAGGEGVKEALFVRAVLSFVAPETRGSNIQVLEDNQG 519          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.680e-24
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 0
Query:    2 TGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
            T P  +NAVRTVAR  H+P +  W+A +KI++YL +T  L   + ++   D    VYVD D+A+K  D RSVS  +V V   +V+  + TQ  V+L T EAEY+AM  G K ALF   ++ FL+P      ID+ EDN+G
Sbjct:   82 TRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEG 221          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KA29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA29_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.810e-24
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T P I+NAVR VAR  H+  + +W+A RKI+ YL  T  L F + ++   D    VYVD ++A+K  D RSVS   V+V D +V   S TQ  V L T EAEYVAM  G K ALF   ++ FL+P      I + EDN+G
Sbjct:   24 QTRPDISNAVRAVARHSHEAKKSHWKAARKILNYLLGTAHLTFKYKQDTMVDVGTLVYVDANFASKATDRRSVSGARVLVADCLVGWISRTQRCVILSTTEAEYVAMGDGVKEALFVNGMLEFLRPSDRIGMIQVREDNEG 164          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 9.560e-24
Identity = 63/141 (44.68%), Postives = 86/141 (60.99%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T P I+NAVR VAR  H+P++ +W+A +KI+ YL +T  L   + ++   D    VYVD D+A++  D RS S  +V+V D +V   S TQ  VTL T EAEYVAM  G K ALF K ++ FL+P      I + EDN+G
Sbjct:  452 QTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEG 592          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.340e-23
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 0
Query:    2 TGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
            T P  +NAVRTVAR  H+P +  W+A +KI++YL +T  L   + ++   D    VYVD D+A+K  D RSVS  +V+V   +V+  S TQ  V+L T EAEY+AM  G K ALF   ++  L+P      ID+ EDN+G
Sbjct:  517 TRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEG 656          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.630e-23
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T   I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F ++   D    VYVD D+A+K  D RSVS  +V V   +V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P +    ID++EDN+G
Sbjct:  320 QTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 460          
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.660e-23
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 0
Query:    1 MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKND--DQHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEAEYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQG 139
             T   I+NAVR VAR  H+P + +W+A +KI+ YL +T  L   F ++   D    VYVD D+A+K  D RSVS  +V V   +V   S TQ  V+  T EAEY+AM  G K ALF   ++ FL+P +    ID++EDN+G
Sbjct: 1192 QTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEG 1332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6189.13750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK1_9PHAE4.590e-2544.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE4.700e-2544.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KCG6_9PHAE8.710e-2543.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ67_9PHAE1.320e-2441.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTP8_9PHAE1.680e-2443.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA29_9PHAE1.810e-2444.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN43_9PHAE9.560e-2444.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.340e-2343.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE2.630e-2343.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE2.660e-2343.26Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..123
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 2..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6189contigH-elongata_contig6189:3247..3681 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6189.13750.1mRNA_H-elongata_contig6189.13750.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6189 3104..4008 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6189.13750.1 ID=prot_H-elongata_contig6189.13750.1|Name=mRNA_H-elongata_contig6189.13750.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MTGPGIANAVRTVARQVHDPDERYWRAVRKIITYLNKTKDLGFVFAKNDD
QHLSVYVDVDYANKDNDLRSVSRVVVIVGDTVVNASSTTQHYVTLFTCEA
EYVAMAQGAKAALFTKAVMGFLQPKIVNETIDLVEDNQGTDKAH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like