prot_H-elongata_contig6175.13733.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6175.13733.1
Unique Nameprot_H-elongata_contig6175.13733.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length256
Homology
BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.290e-27
Identity = 108/341 (31.67%), Postives = 147/341 (43.11%), Query Frame = 0
Query:   11 LRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAIQHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLY------------HGVGVQPHRT-------ISLEAKLAGCNDQG-----------DISITRRWRELAIVTMGREDPIKP--HEQVVKKTWSR------------------------TGGGGPTVEPGSYADIFQDSQRNR-RRGAAVSPGPAAGSTAIVTTTTTAHTDNCGMIKEDRATVRRREAMPSHR---------------------------------------------------GLTRVERAAARRLAWSQARYDDTLG 243
            L+T  DVRALSLN+A+RRLRIEGNP+C+   +HG+Y++A+QHL+PGM LLDGKP   L+    SL S+ P+                 H     PHRT        S + + +G   +G           D+S+ RRWR+ A+          P  H++       R                        TGGGGPTV PGSYA+IF  + R +     AV   PAA +TA V+ ++T      G++    AT R+++  P HR                                                   GL+R ER AARR AWSQAR +  +G
Sbjct:  291 LKTKEDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMRLLDGKPPQVLSL---SLSSTMPLXXXXXXXXXGKPADHHRHNSRRMPHRTSRGPPSSCSPDRRGSGSIREGFMAASSLDFVGDLSVERRWRDSAVAGKSLYPQFAPDSHQRAAASGGVRGGARARXXXXXXXXXGREPCIKVTTGGGGPTVAPGSYAEIFVAAMRKQGSTSRAVVDDPAAFTTAGVSNSSTLAPTQKGVVGTV-ATERQQQQQPGHRAAAQASHGETSVAAAYRPGKRRIPAGGAEVXXXXXXXXXXXAATASLLSYRGLSRAERGAARREAWSQARREGAVG 627          
BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 2.070e-25
Identity = 79/207 (38.16%), Postives = 106/207 (51.21%), Query Frame = 0
Query:   10 LLRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAIQHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLY------------HGVGVQPHRT-------ISLEAKLAGCNDQG-----------DISITRRWRELAIVTMGREDPIKPHEQVVKKTWSR------------------------TGGGGPTVEPGSYADIF 162
            LL+T VDVRALSLN+A+RRLRIEGNP+C+   +HG+Y++A+QHL+PGMSLLDGK  P L+    SL S+ P+                 H     PHRT        S + + +G   +G           D+S+ RRWR+ A+    +  P   H++ V +   R                        TGGGGPTV PGSYA+IF
Sbjct:  237 LLKTKVDVRALSLNAALRRLRIEGNPYCSTGVQHGTYQIALQHLLPGMSLLDGKAPPVLSL---SLSSTMPLPXXXXXXXXGKPGDHHRHNSRRMPHRTSRGTPSSCSPDRRGSGSIREGFMASSSLDFVGDLSVERRWRDSAVAGRSQFTPDS-HQRAVARGGVRGGVRVRGGGDGNGGRGREPCIKVTTGGGGPTVAPGSYAEIF 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6175.13733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHT2_9PHAE2.290e-2731.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKE3_ECTSI2.070e-2538.16Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..67
e-value: 6.9E-8
score: 33.9
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 5..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6175contigH-elongata_contig6175:9864..10778 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6175.13733.1mRNA_H-elongata_contig6175.13733.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6175 9864..10778 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6175.13733.1 ID=prot_H-elongata_contig6175.13733.1|Name=mRNA_H-elongata_contig6175.13733.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
VRQADLSHNLLRTAVDVRALSLNSAIRRLRIEGNPFCTKEAEHGSYEVAI
QHLVPGMSLLDGKPLPGLACPTPSLPSSPPVSCTLYHGVGVQPHRTISLE
AKLAGCNDQGDISITRRWRELAIVTMGREDPIKPHEQVVKKTWSRTGGGG
PTVEPGSYADIFQDSQRNRRRGAAVSPGPAAGSTAIVTTTTTAHTDNCGM
IKEDRATVRRREAMPSHRGLTRVERAAARRLAWSQARYDDTLGPRTAQRR
RTISRR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf