prot_H-elongata_contig61720.13728.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61720.13728.1
Unique Nameprot_H-elongata_contig61720.13728.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length94
Homology
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BLAST of mRNA_H-elongata_contig61720.13728.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 7.070e-24
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 0 
Query:    1 MLDDMRCAGIAIDESTLHLAATAFGRAGLWREGIILTRTAAEEGVPVSPSTATSVLGACAKEGRWEEALEVLDRARPALRESFS 84
            +L++MR AGIA+DES  HLAATAFGRAGLWR+G+ +   AAE+G+ ++P+T TS+LGACAK+ RW EAL +L   RP L++  S
Sbjct:  757 LLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQGLS 840
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61720.13728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE2_ECTSI7.070e-2458.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 51..74
e-value: 7.9E-5
score: 20.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 51..74
e-value: 1.0E-4
score: 22.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..93
e-value: 5.0E-13
score: 51.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61720contigH-elongata_contig61720:437..1112 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61720.13728.1mRNA_H-elongata_contig61720.13728.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61720 437..1125 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61720.13728.1 ID=prot_H-elongata_contig61720.13728.1|Name=mRNA_H-elongata_contig61720.13728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLDDMRCAGIAIDESTLHLAATAFGRAGLWREGIILTRTAAEEGVPVSPS
TATSVLGACAKEGRWEEALEVLDRARPALRESFSREERLARDEG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf