prot_H-elongata_contig61280.13675.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61280.13675.1
Unique Nameprot_H-elongata_contig61280.13675.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length51
Homology
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: D8LGI0_ECTSI (SFM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.320e-23
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 51
            DGALVATGDLGG  RVWDLRSG+SVWTMEGHVKRITCMDFSPC +EVASGS
Sbjct:  467 DGALVATGDLGGVGRVWDLRSGKSVWTMEGHVKRITCMDFSPCAYEVASGS 517          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A836C808_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C808_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.060e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSP 42
            DGAL ATGD  G  RVWDLRSGR+V ++ GHVKR+T   FSP
Sbjct:    9 DGALAATGDFAGVVRVWDLRSGRAVHSVAGHVKRVTACAFSP 50          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A2S4WDC4_9BASI (SFM domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4WDC4_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 4.760e-10
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 51
            DGAL+ +G L    RVWDLRSG++V  ++GHVK I  +DFSP  H++A+GS
Sbjct:  349 DGALLCSGGLDAIGRVWDLRSGKTVMVLDGHVKDILAIDFSPNGHQIATGS 399          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A835YL38_9STRA (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.510e-10
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSP 42
            DGAL ATGD  G  RVWDLRSGR+V ++ GHVKR+T   FSP
Sbjct:  421 DGALAATGDFAGVVRVWDLRSGRAVHSVAGHVKRVTACAFSP 462          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S3M504_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M504_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-8
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDF 40
            DG+LVAT DLGG  RVWDLRSG+SV  + GH K++  +DF
Sbjct:    6 DGSLVATSDLGGVVRVWDLRSGKSVMPLTGHGKQVMSLDF 45          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S0QPM6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPM6_9CRYP)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-8
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDF 40
            DGALVAT  L    R+WDLRSGRSV T++GHVK+I  +DF
Sbjct:   25 DGALVATAGLDAIGRIWDLRSGRSVMTLQGHVKQILGIDF 64          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A7S2UVM4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVM4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.690e-7
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 0
Query:   16 VWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 51
            +WDLRSG+++WTM+GHVKR+   DFSP    +ASGS
Sbjct:    1 LWDLRSGKAIWTMQGHVKRMIAADFSPNGFTLASGS 36          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: UPI001AD8ACBA (U4/U6 small nuclear ribonucleoprotein PRP4-like protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8ACBA)

HSP 1 Score: 53.9 bits (128), Expect = 4.600e-7
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCM 38
            DG+LVAT  L   ARVWDLRSGRS+ T+EGHVK++  +
Sbjct:  213 DGSLVATAGLDALARVWDLRSGRSILTLEGHVKKVLAL 250          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: A0A0L0FPP3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPP3_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 7.600e-7
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0
Query:   15 RVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASGS 51
            RVWDLRSGR VW M GHVK +  +D +P  H +A+GS
Sbjct:    6 RVWDLRSGRCVWDMFGHVKNVLAVDVAPDGHYIATGS 42          
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Match: B6A9W5_CRYMR (U4/U6 small nuclear ribonucleoprotein Prp4, putative n=2 Tax=Cryptosporidium TaxID=5806 RepID=B6A9W5_CRYMR)

HSP 1 Score: 52.4 bits (124), Expect = 1.620e-6
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0
Query:    1 DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCC 44
            DGAL+ATGDLGG   +WDLRSG  +  +  HV +I  + FSP C
Sbjct:  274 DGALLATGDLGGIVNIWDLRSGYLIMPLTEHVGQILSVKFSPRC 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61280.13675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LGI0_ECTSI1.320e-2390.20SFM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C808_9STRA1.060e-1066.67WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A2S4WDC4_9BASI4.760e-1054.90SFM domain-containing protein n=1 Tax=Puccinia str... [more]
A0A835YL38_9STRA6.510e-1066.67Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S3M504_9STRA1.110e-862.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0QPM6_9CRYP2.390e-865.00Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S2UVM4_9STRA2.690e-761.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI001AD8ACBA4.600e-763.16U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
A0A0L0FPP3_9EUKA7.600e-759.46Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
B6A9W5_CRYMR1.620e-654.55U4/U6 small nuclear ribonucleoprotein Prp4, putati... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..51
e-value: 3.5E-14
score: 54.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 23..51
e-value: 0.0014
score: 19.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..27
score: 10.341
NoneNo IPR availablePANTHERPTHR19846WD40 REPEAT PROTEINcoord: 1..51
NoneNo IPR availablePANTHERPTHR19846:SF0U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP4coord: 1..51
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..51
score: 14.582
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61280contigH-elongata_contig61280:86..716 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61280.13675.1mRNA_H-elongata_contig61280.13675.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61280 84..716 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61280.13675.1 ID=prot_H-elongata_contig61280.13675.1|Name=mRNA_H-elongata_contig61280.13675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
DGALVATGDLGGTARVWDLRSGRSVWTMEGHVKRITCMDFSPCCHEVASG
S
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf