prot_H-elongata_contig61222.13668.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61222.13668.1
Unique Nameprot_H-elongata_contig61222.13668.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length115
Homology
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KEA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.530e-15
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            PT+  +V  S ++  +E A R EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:   73 PTTYKDVRCSKYKVFWEAAMRKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 173          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.690e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    4 RKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            +K  N+   P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  204 QKPSNVKAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 313          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K282_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K282_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.110e-14
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++  +S  P+AA +K + AV
Sbjct:  122 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHLSSACPSAASIKTVIAV 222          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.490e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  108 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 208          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.880e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  458 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAV 558          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.910e-14
Identity = 40/112 (35.71%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    4 RKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            +K+ ++   P +  +V+ S +   +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  256 QKLSDVQAVPMTYKDVMCSKYNVFWEAAIKEEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 365          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5JGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.980e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  648 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 748          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.020e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  359 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 459          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 6.030e-14
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E A + EI+G    G F  V E  +P+ RK + SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  500 PMTYKDVMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKE--LPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 600          
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Match: A0A6H5K0G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.550e-13
Identity = 38/103 (36.89%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   13 PTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDEDKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETTSPKPAAAPVKMITAV 115
            P +  +V+ S ++  +E   + EI+G    G F  V E  +P+ RK ++SKWV ++K +++G  V  K+R VA+GFSQ+ G+D++ ++S  P+AA +K + AV
Sbjct:  803 PMTYKDVMCSKYKVFWEAVMKKEIDGHDKTGIFTKVKE--LPEGRKAISSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAV 903          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61222.13668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEA7_9PHAE8.530e-1539.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.690e-1436.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K282_9PHAE2.110e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.490e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE5.880e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE5.910e-1435.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JGK7_9PHAE5.980e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE6.020e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE6.030e-1437.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K0G6_9PHAE1.550e-1336.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 52..114
e-value: 7.1E-14
score: 52.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61222contigH-elongata_contig61222:2947..3291 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61222.13668.1mRNA_H-elongata_contig61222.13668.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61222 2947..3291 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61222.13668.1 ID=prot_H-elongata_contig61222.13668.1|Name=mRNA_H-elongata_contig61222.13668.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MPTRKIQNLPPPPTSQAEVIRSPFRKTFEDAQRVEINGLLDVGCFAPVDE
DKIPKDRKIVASKWVHTYKGDDQGYCVKTKSRQVAKGFSQVVGVDYNETT
SPKPAAAPVKMITAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2