prot_H-elongata_contig6114.13660.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig6114.13660.1
Unique Nameprot_H-elongata_contig6114.13660.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length409
Homology
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BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Match: D7FZK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 8.960e-18
Identity = 57/107 (53.27%), Postives = 68/107 (63.55%), Query Frame = 0 
Query:  274 GPGDEAPTEPDMDDSSFAQECDRDVGAVDAVHQADGG-KGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQELSFMLSSTLKIEWPQQYIAYLEEKLVFRSE 379
            G GDE  T  + +D +         GA D     D G KG   KELLRV GLCR++G++L LVEW+VVD  GA   ELSF+LSSTLK EWP+QYI YLE K+VF  E
Sbjct:  549 GSGDEGCTYFEYEDPATG-------GAQDDGRPEDNGPKGGPQKELLRVRGLCRMQGSVLALVEWSVVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEE 648
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BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Match: A0A6H5KZ06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.200e-17
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 0 
Query:  302 DAVHQADGGKGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQELSFMLSSTLKIEWPQQYIAYLEEKLVFRSED 380
            D  H+ +  KG+  K+LLRV GLCR++G++L LVEW++VD  GA   ELSF+LSSTLK EWP+QYI YLE K+VF  E+
Sbjct:  576 DRRHKDNDPKGAPQKKLLRVRGLCRMQGSVLALVEWSMVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEEE 654
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6114.13660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZK8_ECTSI8.960e-1853.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ06_9PHAE5.200e-1758.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6114contigH-elongata_contig6114:660..3733 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6114.13660.1mRNA_H-elongata_contig6114.13660.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig6114 605..4129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig6114.13660.1 ID=prot_H-elongata_contig6114.13660.1|Name=mRNA_H-elongata_contig6114.13660.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=409bp
MEDTPLGPEGTARGGRARGSGVVPIGTTRRRQKVASLVELLQELSVPHQR
RSSTARGWTGATSDMQGIDQQNALDQQRPRQESVGPAPTLSGPSRTIAHR
DISSNDEKNGRRSGADRETQGTGCYFGTILDNTSEHASSVGAFAGSGSQS
CPAISPEAVYVGGVRGGTNSPKERSVRRRRLDGGHRDIVRALESREDKNQ
WLTQVDSRTSSIWKQQYYGGDSAQRKTEKSVPQGRRIQAIGENRGRRPAQ
QDRPDVVPIGLQRTNGIVVDADTGPGDEAPTEPDMDDSSFAQECDRDVGA
VDAVHQADGGKGSSTKELLRVCGLCRVRGAILVLVEWNVVDAVGATCQEL
SFMLSSTLKIEWPQQYIAYLEEKLVFRSEDDVEESQRLRSTTDTEDGAGT
DHVANDAR*
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