prot_H-elongata_contig61108.13657.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61108.13657.1
Unique Nameprot_H-elongata_contig61108.13657.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length95
Homology
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: D7G6E1_ECTSI (NFACT-R_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6E1_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.090e-29
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLIRYG PEDVWFHVDNLSSAHVYLRMNRGEK+K+L P LLVECC+LVK +
Sbjct:   15 MGKDKYENEDLIRYGFPEDVWFHVDNLSSAHVYLRMNRGEKLKELDPALLVECCTLVKAN 74          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A835Z4I1_9STRA (NFACT-R_1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 7.680e-29
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLIRYG+PEDVWFHVDNLSSAHVYLRMN+GEK+K++ PE+++ECC LVK +
Sbjct:   14 MGKDKYENEDLIRYGLPEDVWFHVDNLSSAHVYLRMNKGEKLKEVLPEVIMECCQLVKAN 73          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A672IGJ2_SALFA (Coiled-coil domain-containing protein 25 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672IGJ2_SALFA)

HSP 1 Score: 98.2 bits (243), Expect = 6.240e-25
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVK 58
            MGKDK+ENEDLIRYG PED+WFHVD LSSAHVYLRM +G+ + D+ PE+L++C  LVK
Sbjct:   18 MGKDKYENEDLIRYGWPEDIWFHVDKLSSAHVYLRMPKGQTIDDIPPEVLIDCAQLVK 75          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A7S0GIL2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIL2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.400e-25
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG+PEDVWFHVD++SSAHVYLR   GE + D++PEL+++CCSLVK +
Sbjct:   23 MGKDKYENEDLIKYGLPEDVWFHVDDMSSAHVYLRQKTGELLADISPELMLDCCSLVKAN 82          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A452DR27_CAPHI (Coiled-coil domain-containing protein 25 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452DR27_CAPHI)

HSP 1 Score: 97.4 bits (241), Expect = 1.220e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   18 MGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 77          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A337SDQ0_FELCA (Coiled-coil domain-containing protein 25 n=35 Tax=Eutheria TaxID=9347 RepID=A0A337SDQ0_FELCA)

HSP 1 Score: 97.4 bits (241), Expect = 1.290e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   19 MGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI00122F24FF (coiled-coil domain-containing protein 25 isoform X3 n=1 Tax=Globicephala melas TaxID=9731 RepID=UPI00122F24FF)

HSP 1 Score: 97.4 bits (241), Expect = 1.530e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   19 MGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A8C9PMD3_SPEDA (Coiled-coil domain-containing protein 25 n=1 Tax=Spermophilus dauricus TaxID=99837 RepID=A0A8C9PMD3_SPEDA)

HSP 1 Score: 97.4 bits (241), Expect = 3.270e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   19 MGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: UPI0003F06742 (coiled-coil domain-containing protein 25-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F06742)

HSP 1 Score: 97.4 bits (241), Expect = 4.810e-24
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSSAHVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   19 MGKDKYENEDLIKYGWPEDIWFHVDKLSSAHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78          
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Match: A0A5F9DP04_RABIT (Coiled-coil domain-containing protein 25 n=4 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F9DP04_RABIT)

HSP 1 Score: 95.9 bits (237), Expect = 5.250e-24
Identity = 39/60 (65.00%), Postives = 52/60 (86.67%), Query Frame = 0
Query:    1 MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELLVECCSLVKVS 60
            MGKDK+ENEDLI+YG PED+WFHVD LSS HVYLR+++GEK++D+  E+L++C  LVK +
Sbjct:   19 MGKDKYENEDLIKYGWPEDIWFHVDKLSSGHVYLRLHKGEKIEDIPKEVLMDCAHLVKAN 78          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61108.13657.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6E1_ECTSI1.090e-2985.00NFACT-R_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z4I1_9STRA7.680e-2978.33NFACT-R_1 domain-containing protein n=1 Tax=Tribon... [more]
A0A672IGJ2_SALFA6.240e-2570.69Coiled-coil domain-containing protein 25 n=1 Tax=S... [more]
A0A7S0GIL2_9STRA8.400e-2570.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A452DR27_CAPHI1.220e-2466.67Coiled-coil domain-containing protein 25 n=1 Tax=C... [more]
A0A337SDQ0_FELCA1.290e-2466.67Coiled-coil domain-containing protein 25 n=35 Tax=... [more]
UPI00122F24FF1.530e-2466.67coiled-coil domain-containing protein 25 isoform X... [more]
A0A8C9PMD3_SPEDA3.270e-2466.67Coiled-coil domain-containing protein 25 n=1 Tax=S... [more]
UPI0003F067424.810e-2466.67coiled-coil domain-containing protein 25-like n=1 ... [more]
A0A5F9DP04_RABIT5.250e-2465.00Coiled-coil domain-containing protein 25 n=4 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008532NFACT, RNA-binding domainPFAMPF05670NFACT-R_1coord: 1..59
e-value: 1.8E-18
score: 67.2
NoneNo IPR availablePANTHERPTHR13049:SF2COILED-COIL DOMAIN-CONTAINING PROTEIN 25coord: 1..60
IPR039730Jlp2/Ccd25PANTHERPTHR13049DUF814-RELATEDcoord: 1..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61108contigH-elongata_contig61108:1135..2013 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61108.13657.1mRNA_H-elongata_contig61108.13657.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61108 1105..2159 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61108.13657.1 ID=prot_H-elongata_contig61108.13657.1|Name=mRNA_H-elongata_contig61108.13657.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MGKDKHENEDLIRYGVPEDVWFHVDNLSSAHVYLRMNRGEKVKDLAPELL
VECCSLVKVSVGRLNQAWGGSARFKKTRRFSFKKQIGMHQHQQQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008532NFACT_RNA-bd
IPR039730Jlp2/Ccd25