prot_H-elongata_contig61071.13654.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61071.13654.1
Unique Nameprot_H-elongata_contig61071.13654.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
[Close]
BLAST of mRNA_H-elongata_contig61071.13654.1 vs. uniprot
Match: A0A6H5KXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-12
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 0 
Query:    1 GVSAVAIERAAAEKAFGTLSKNLGRVSTPAFETLLASLGVPAERRKGAATESARAAGLLSAYSFTRKDFIEW 72
            G + V  ER AAE+AF ++ +N GRVS    E LL  LG+PA +R   ATESARAAGLLSA SF+ ++F++W
Sbjct:   39 GSAEVLEERLAAERAFSSMDQNSGRVSARRLEELLTLLGMPAAQRGAKATESARAAGLLSAPSFSCQEFVDW 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61071.13654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXR2_9PHAE1.730e-1254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61071contigH-elongata_contig61071:3102..3320 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61071.13654.1mRNA_H-elongata_contig61071.13654.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61071 3102..3320 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61071.13654.1 ID=prot_H-elongata_contig61071.13654.1|Name=mRNA_H-elongata_contig61071.13654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
GVSAVAIERAAAEKAFGTLSKNLGRVSTPAFETLLASLGVPAERRKGAAT
ESARAAGLLSAYSFTRKDFIEW*
back to top