prot_H-elongata_contig61016.13647.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig61016.13647.1
Unique Nameprot_H-elongata_contig61016.13647.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
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BLAST of mRNA_H-elongata_contig61016.13647.1 vs. uniprot
Match: D7FK96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK96_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-7
Identity = 25/38 (65.79%), Postives = 26/38 (68.42%), Query Frame = 0 
Query:    1 QANGKGTAFRKMAAKESLKLACFFAAVRAAHFWMNRQR 38
            QANGKG  FRK A    LKL  FFAAVR AH+ MNR R
Sbjct:    9 QANGKGNEFRKAATSSGLKLLAFFAAVRVAHYAMNRPR 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig61016.13647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK96_ECTSI1.350e-765.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 17..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig61016contigH-elongata_contig61016:1255..1371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig61016.13647.1mRNA_H-elongata_contig61016.13647.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig61016 1255..1371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig61016.13647.1 ID=prot_H-elongata_contig61016.13647.1|Name=mRNA_H-elongata_contig61016.13647.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
QANGKGTAFRKMAAKESLKLACFFAAVRAAHFWMNRQR*
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