prot_H-elongata_contig60604.13601.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60604.13601.1
Unique Nameprot_H-elongata_contig60604.13601.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length232
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60604.13601.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 57..83
e-value: 0.23
score: 11.8
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 16..48
e-value: 1.1E-8
score: 34.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 166..212
e-value: 2.2E-9
score: 37.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 117..158
e-value: 0.0043
score: 17.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 22..55
e-value: 1.6E-8
score: 32.2
coord: 169..203
e-value: 4.3E-5
score: 21.4
coord: 97..130
e-value: 4.7E-4
score: 18.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 167..201
score: 11.52
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 202..231
score: 5.634
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 94..129
score: 8.111
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..160
score: 7.585
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 20..54
score: 13.121
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 55..85
score: 7.509
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..19
score: 5.02
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 124..230
e-value: 8.3E-24
score: 86.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..123
e-value: 9.6E-31
score: 109.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..110
coord: 90..223

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60604contigH-elongata_contig60604:86..3441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60604.13601.1mRNA_H-elongata_contig60604.13601.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60604 86..3441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60604.13601.1 ID=prot_H-elongata_contig60604.13601.1|Name=mRNA_H-elongata_contig60604.13601.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp
RWDKATGLLAEVWLAGLKPDSYTYSSAIHACAAAGRWEEAMSLLREMESV
GLGPSVVAYGAAMSALANGKQWERALKLLDEVCSRPKSSEVGPNTVLYGA
AIRACSGAGKWRVGLELLEKMHSADGVRPSLVCFNAALHGLATAGEAKRA
RRLLEAMQRGPRATRPDVYSYNSAIAACGPKGRAAEARELLEDMRRCGTA
PDVFSFNGVMQANVGGGNWADALEARASLLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf