prot_H-elongata_contig60488.13591.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60488.13591.1
Unique Nameprot_H-elongata_contig60488.13591.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
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BLAST of mRNA_H-elongata_contig60488.13591.1 vs. uniprot
Match: D7G1F6_ECTSI (Elongation of fatty acids protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 5.690e-13
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:    1 GSIGVVAALEEWAIGAVNSLKAGDWRSRTFSVISFWGWASVAAYVALVEALPGLLRPFHPLFR 63
            G +  + A   W  G  + L+ G+WRS  F VI FWGWASVA Y+ALVEALP +L+P H +FR
Sbjct:  353 GVLPTLQACLHWMKGLWSVLEEGEWRSVRFGVIEFWGWASVAGYLALVEALPVMLQPLHGVFR 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60488.13591.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F6_ECTSI5.690e-1352.38Elongation of fatty acids protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..55
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..68
NoneNo IPR availableTMHMMTMhelixcoord: 33..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60488contigH-elongata_contig60488:358..564 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60488.13591.1mRNA_H-elongata_contig60488.13591.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60488 358..564 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60488.13591.1 ID=prot_H-elongata_contig60488.13591.1|Name=mRNA_H-elongata_contig60488.13591.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
GSIGVVAALEEWAIGAVNSLKAGDWRSRTFSVISFWGWASVAAYVALVEA
LPGLLRPFHPLFRCGVRD*
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