prot_H-elongata_contig60031.13538.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60031.13538.1
Unique Nameprot_H-elongata_contig60031.13538.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length205
Homology
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BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Match: A0A6H5KKY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY4_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 2.390e-93
Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 0 
Query:   28 AHMAWNPSGTHLAIGHTGANLVNDWAATIIGHDRGSKG-MKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDGQVVIWTRVLDASSDLHKVAVLHSKHSSAVRSACCPSISPTVVSGGADGRLVSFSIETASVEWEETLMVSNTYHPSVNELLEFPDNPCCLLVSAVDTARSHSMFT 204
            AHMAWNPSGTHLAIGH+G+ LVN+WAATII  D  SK  MKLRS++H KPAQAVAWVTPSKN QDHLVTGGEDG VVIWTRVLDA SDLHKVA+LHS+H+SAVRSACCPSISPTVV+GGADGRLVS+SIETASV+WEE L VS TYHP VNELLEFPDNP  LLVS VDTA+SHS+FT
Sbjct:  679 AHMAWNPSGTHLAIGHSGSTLVNNWAATIIAKDGRSKSDMKLRSDRHNKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVAILHSRHTSAVRSACCPSISPTVVTGGADGRLVSYSIETASVQWEELLRVSKTYHPMVNELLEFPDNPHSLLVSTVDTAKSHSLFT 856
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BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Match: D8LT10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT10_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.490e-42
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 0 
Query:   28 AHMAWNPSGTHLAIGHTGANLVNDWAATIIGHD-RGSKGMKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDGQVVIWTRVLDASSDLHKVA 119
            AHMAWNPSGTHLAIGH+G+ LVN+WAATII  D R    MKLRS++H KPAQAVAWVTPSKN QDHLVTGGEDG VVIWTRVLDA SDLHKVA
Sbjct:  520 AHMAWNPSGTHLAIGHSGSTLVNNWAATIIAKDGRRKSDMKLRSDRHHKPAQAVAWVTPSKNNQDHLVTGGEDGHVVIWTRVLDAESDLHKVA 612
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60031.13538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKY4_9PHAE2.390e-9382.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT10_ECTSI6.490e-4281.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 114..154
e-value: 3.9
score: 13.3
coord: 64..106
e-value: 0.55
score: 18.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 14..201
e-value: 1.9E-13
score: 52.0
NoneNo IPR availablePANTHERPTHR47232FAMILY NOT NAMEDcoord: 29..196
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 29..192

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60031contigH-elongata_contig60031:481..3244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60031.13538.1mRNA_H-elongata_contig60031.13538.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60031 351..3244 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60031.13538.1 ID=prot_H-elongata_contig60031.13538.1|Name=mRNA_H-elongata_contig60031.13538.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp
MMDDAHTKLRLDGVGSGWRCSLFRENQAHMAWNPSGTHLAIGHTGANLVN
DWAATIIGHDRGSKGMKLRSNKHTKPAQAVAWVTPSKNKQDHLVTGGEDG
QVVIWTRVLDASSDLHKVAVLHSKHSSAVRSACCPSISPTVVSGGADGRL
VSFSIETASVEWEETLMVSNTYHPSVNELLEFPDNPCCLLVSAVDTARSH
SMFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf