prot_H-elongata_contig5985.13505.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5985.13505.1
Unique Nameprot_H-elongata_contig5985.13505.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length316
Homology
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BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Match: D7FJM8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJM8_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 6.410e-33
Identity = 159/277 (57.40%), Postives = 181/277 (65.34%), Query Frame = 0 
Query:   61 VDPRFSFDGDSSFLGLAESQAIRGWDFKSAIEKLAKEDPNRARSSLVLDARIAAKRAELRKGRNKAKARKXXXXXXXXXXXXXXXXXXXXXXXXXXXVDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXKMGL--------------LGEDNLRELAVATGARGKRLEAAKRRKQK-------AVQDRDESERNFDGGGVLDPGDEGRNSDEXXXXXXXXXAAAFFGEGVGDDPSPGVEGAE-GGVPFQRLNLSRPLLRAVEAMGFVKPTPIQQRAVP 315
            VDP FSFD DS  LG+AE QA++GWDFKSAIEKLA EDP RAR+  VL+ RIAAKR+ELRKG+ KAK         XXXXXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXX                  L EDNLREL+   G+RGKRLEAAKR++ +       A  D+ +S+                   E         AA +F +G   D SPG + A  GGVPFQ+LN+SRPLLRAVEAMG+V PT +QQRAVP
Sbjct:   71 VDPSFSFDVDSGNLGIAERQAVKGWDFKSAIEKLAMEDPRRARTGRVLEDRIAAKRSELRKGKKKAKDNAKAIKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEGLEEDNLRELSA--GSRGKRLEAAKRKEDRLSAAAAAAGNDKGQSDNXXXXXXXXXXXXXXXXXXEAKK------AAEYFEDGDDADASPGGDDASSGGVPFQQLNISRPLLRAVEAMGYVTPTSVQQRAVP 339
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BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Match: A0A835YJC4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJC4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.370e-5
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0 
Query:   81 AIRGWDFKSAIEKLAKEDPNRARSSLVLDARIAAKRAELRKGRNKAK 127
            A RGW+F++ IEKLAKEDP RA ++  LDA+IAAKR EL K R + K
Sbjct:   72 AARGWNFRATIEKLAKEDPRRAGTAASLDAKIAAKRKELLKKRKEGK 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5985.13505.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJM8_ECTSI6.410e-3357.40DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YJC4_9STRA3.370e-561.70P-loop containing nucleoside triphosphate hydrolas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 212..232
NoneNo IPR availableCOILSCoilCoilcoord: 116..136
NoneNo IPR availableGENE3D3.40.50.300coord: 247..316
e-value: 2.3E-5
score: 25.5
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 283..311
score: 11.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5985contigH-elongata_contig5985:7505..11223 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5985.13505.1mRNA_H-elongata_contig5985.13505.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5985 7505..11223 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5985.13505.1 ID=prot_H-elongata_contig5985.13505.1|Name=mRNA_H-elongata_contig5985.13505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=316bp
MTMTIASDDEIELETDDDTDSSGEGEQQPDTLPRAVLTNARKKHERQRKA
GRAVGKERGEVDPRFSFDGDSSFLGLAESQAIRGWDFKSAIEKLAKEDPN
RARSSLVLDARIAAKRAELRKGRNKAKARKADAKAAEAVDDEEDNEESPE
REGRGDGVDNMDEDESDGDGDGRAPEEEAEEGEDEEEEKMGLLGEDNLRE
LAVATGARGKRLEAAKRRKQKAVQDRDESERNFDGGGVLDPGDEGRNSDE
DEEEEEARKAAAFFGEGVGDDPSPGVEGAEGGVPFQRLNLSRPLLRAVEA
MGFVKPTPIQQRAVPL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif