prot_H-elongata_contig59729.13489.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59729.13489.1
Unique Nameprot_H-elongata_contig59729.13489.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: D7FS51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS51_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.680e-50
Identity = 78/98 (79.59%), Postives = 90/98 (91.84%), Query Frame = 0
Query:    1 QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            QR G STLRRG+TGP+SA+ RLPMRGLE+FRDP+ VKAGDVPIVGR WTVPELR+KSFEDLHKLWFVLYKEKNMLM+++ +SRR+K  +PAGDRRQKV
Sbjct:   63 QRAGLSTLRRGLTGPLSARLRLPMRGLEEFRDPEVVKAGDVPIVGRSWTVPELRRKSFEDLHKLWFVLYKEKNMLMSQVVLSRRSKVPIPAGDRRQKV 160          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A6H5KQ57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ57_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.540e-33
Identity = 54/65 (83.08%), Postives = 60/65 (92.31%), Query Frame = 0
Query:    1 QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLW 65
            QR G STLRRG+TGP+SA+ RLPMRGLE+FRDP+ VKAGDVPIVGR WTVPELR+KSFEDLHKLW
Sbjct:   63 QRAGLSTLRRGLTGPLSARLRLPMRGLEEFRDPEVVKAGDVPIVGRSWTVPELRRKSFEDLHKLW 127          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A835YLR8_9STRA (Mitochondrial 39-S ribosomal protein L47 (MRP-L47)-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.950e-27
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 0
Query:    8 LRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKAL-LPAGDRRQKV 98
            LRRG  GP SA  RLP RGLE+F D DT +  D PI GR WTV ELR+KSF+DLHKLW+VLYKEKN+L+TE  ++RR     L A DR +KV
Sbjct:    9 LRRGAVGPASAASRLPRRGLEEFIDNDTRRGAD-PIAGRAWTVTELRQKSFDDLHKLWWVLYKEKNLLLTEKLVTRRKGGNELRAPDRAKKV 99          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S2MMC9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MMC9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.220e-18
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 0
Query:   14 GPISAKQRLPMRG---LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            G  S   ++P  G   L+ FRD  T +A    +VGR WTV ELR+KSFEDLH LWFVLYKE NML+TE  +SRR   + P  DR++KV
Sbjct:  135 GAESTDGKVPNHGNSPLDAFRDSVTREARAKEMVGRSWTVKELRRKSFEDLHSLWFVLYKEWNMLLTEANLSRRKGIVFPQPDRKRKV 222          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S2UD47_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD47_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.510e-18
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    4 GFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            GF++     T   +A        L+ F DP   +A    +VGR W+V ELR+KSF+DLH+LWFVLY+E+NML+TE A  RR    LP  DRR KV
Sbjct:   42 GFASTSGSTTNTFAASP------LDAFMDPAAYEARQTEMVGRAWSVRELRRKSFDDLHRLWFVLYQERNMLLTEAAKCRRKGMYLPQPDRRHKV 130          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A448Z5R2_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5R2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.880e-18
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0
Query:    4 GFSTLRRGITGPI--------SAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            GFS  R G + P+        ++K+      L+ FRDP          VGR W+  ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  +R +KV
Sbjct:   43 GFSENRTGHSSPLRSYSSTRTTSKREYKPNPLDAFRDPVDRSTRMEQTVGRQWSAKELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPERFKKV 145          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A6U3P2T2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P2T2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.450e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 0
Query:   17 SAKQRLPMRG---LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            S + ++P  G   L+ FRD  T  A    +VGR WTV ELR+KSF+DLH LWFVLYKE NML+TE  +SRR   + P  +R+ KV
Sbjct:   54 STEGKIPNHGSSPLDAFRDSVTRDARMNELVGRSWTVKELRRKSFDDLHSLWFVLYKEYNMLLTEANLSRRKGLVFPQPERKVKV 138          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S4ALY4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ALY4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 4.080e-17
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0
Query:   13 TGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            T   SA++  P   L+ FRDP   +      VGR W+V ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  DR +KV
Sbjct:   68 TAVSSAREYKPSP-LDAFRDPVGRQTRMEQPVGRQWSVKELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPDRFKKV 152          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A1E7FV10_9STRA (MRP-L47-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV10_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.170e-16
Identity = 35/56 (62.50%), Postives = 46/56 (82.14%), Query Frame = 0
Query:   43 IVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            IVGR W+V ELR+KS+EDLH+LW+VLYKEKNML+TE  +SRR + + P  +R +KV
Sbjct:    1 IVGRQWSVTELRRKSYEDLHRLWYVLYKEKNMLLTEQQLSRRRQLIFPQPERFKKV 56          
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Match: A0A7S3PBB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PBB6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.410e-16
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 0
Query:   27 LEDFRDPDTVKAGDVPIVGRPWTVPELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV 98
            L++FRD  + +      VGR W+  ELR+KSFEDLHKLW VLYKE+NML+TE  ISRR + + P  +R QKV
Sbjct:   48 LDEFRDTVSRQDRMAERVGRSWSAKELRRKSFEDLHKLWLVLYKERNMLLTEQQISRRKQIIFPQPNRFQKV 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59729.13489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS51_ECTSI1.680e-5079.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ57_9PHAE3.540e-3383.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLR8_9STRA7.950e-2761.96Mitochondrial 39-S ribosomal protein L47 (MRP-L47)... [more]
A0A7S2MMC9_9STRA2.220e-1853.41Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2UD47_9STRA2.510e-1847.37Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A448Z5R2_9STRA4.880e-1843.69Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U3P2T2_9STRA2.450e-1751.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4ALY4_9STRA4.080e-1751.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FV10_9STRA1.170e-1662.50MRP-L47-domain-containing protein (Fragment) n=1 T... [more]
A0A7S3PBB6_9STRA1.410e-1655.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038340MRP-L47 superfamily, mitochondrialGENE3D1.20.1280.190coord: 24..98
e-value: 9.6E-17
score: 62.8
IPR010729Ribosomal protein L47, mitochondrialPFAMPF06984MRP-L47coord: 34..98
e-value: 5.0E-17
score: 61.8
IPR010729Ribosomal protein L47, mitochondrialPANTHERPTHR21183RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATEDcoord: 20..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59729contigH-elongata_contig59729:1936..3584 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59729.13489.1mRNA_H-elongata_contig59729.13489.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59729 1936..3584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59729.13489.1 ID=prot_H-elongata_contig59729.13489.1|Name=mRNA_H-elongata_contig59729.13489.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QRTGFSTLRRGITGPISAKQRLPMRGLEDFRDPDTVKAGDVPIVGRPWTV
PELRKKSFEDLHKLWFVLYKEKNMLMTELAISRRTKALLPAGDRRQKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038340MRP-L47_sf
IPR010729Ribosomal_L47_mit