prot_H-elongata_contig59695.13486.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59695.13486.1
Unique Nameprot_H-elongata_contig59695.13486.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.770e-29
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 0 
Query:    2 AVFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDELSPAEVSAFARVQQAAAKMAVVATA 74
            AVFEDLWAKGLC A GSNY AD+VVYNGPPTE HS AAV+VSRG+NDELSPAE+S FARVQQA  K AV+ATA
Sbjct:  155 AVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATA 227
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: A0A061D0Q0_BABBI (tRNA-intron lyase n=1 Tax=Babesia bigemina TaxID=5866 RepID=A0A061D0Q0_BABBI)

HSP 1 Score: 49.3 bits (116), Expect = 5.000e-5
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 0 
Query:    3 VFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDELSPAEVSAFARVQQAAAK 67
            V+ DL AK L V  G +YGAD V+Y G P ECHS A + V      E+    V  + RV  AA K
Sbjct:    8 VYRDLSAKRLKVKDGMHYGADLVIYEGDPRECHSYALIYVKHD-GQEIPAQSVVRWTRVAAAAKK 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE4.770e-2980.82tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A061D0Q0_BABBI5.000e-544.62tRNA-intron lyase n=1 Tax=Babesia bigemina TaxID=5... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 2..75
e-value: 9.1E-13
score: 48.1
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 1..88
e-value: 1.4E-14
score: 55.9
NoneNo IPR availablePANTHERPTHR13070TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATEDcoord: 2..77
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 2..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59695contigH-elongata_contig59695:235..1066 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59695.13486.1mRNA_H-elongata_contig59695.13486.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59695 96..2530 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59695.13486.1 ID=prot_H-elongata_contig59695.13486.1|Name=mRNA_H-elongata_contig59695.13486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MAVFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDEL
SPAEVSAFARVQQAAAKMAVVATASVPAKAKAATLTTSACDSGLATIENE
PRSEDGLVEENSVRYVTLRFHSVSSRMS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR036167tRNA_intron_Endo_cat-like_sf