prot_H-elongata_contig59648.13482.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59648.13482.1
Unique Nameprot_H-elongata_contig59648.13482.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.570e-24
Identity = 65/129 (50.39%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    1 MKEGIVVTKMLHGKYRQLWNERNTLLAP--LPPQPCASGKEVNSN----GKVPE--GEGDRDG---------------------GYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL 100
            MKEGIVVTKML+GKYRQ+WNER++L  P    P   A G + +SN    G +P    E ++ G                     G+   LP S DP+ALPRLGWYLYLLTK+VLGFRSSN AF+RCL+L
Sbjct:   99 MKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAENNKGGXXXXXXTSDDHDINSAAVAAAGFPLPLPPS-DPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNL 226
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BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-12
Identity = 40/76 (52.63%), Postives = 48/76 (63.16%), Query Frame = 0 
Query:   33 PCASGKEVNSNGKVPEGEGDRD--------GGYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL 100
            P  + +  N +G   E   D D         G+   LP S DP+ALPRLGWYLYLLTK+VLGFRSSN AF+RCL+L
Sbjct:  150 PSQAAENKNKSGGADETSDDHDISSAATAAAGFPLPLPPS-DPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59648.13482.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8E5_ECTSI2.570e-2450.39Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHA1_9PHAE1.080e-1252.63RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024599Retinoblastoma-associated protein, N-terminalPFAMPF11934DUF3452coord: 1..100
e-value: 1.6E-9
score: 37.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59648contigH-elongata_contig59648:2360..3053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59648.13482.1mRNA_H-elongata_contig59648.13482.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59648 2360..3057 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59648.13482.1 ID=prot_H-elongata_contig59648.13482.1|Name=mRNA_H-elongata_contig59648.13482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MKEGIVVTKMLHGKYRQLWNERNTLLAPLPPQPCASGKEVNSNGKVPEGE
GDRDGGYHASLPKSTDPEALPRLGWYLYLLTKEVLGFRSSNVAFMRCLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024599RB_N