prot_H-elongata_contig596.13472.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig596.13472.1
Unique Nameprot_H-elongata_contig596.13472.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
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BLAST of mRNA_H-elongata_contig596.13472.1 vs. uniprot
Match: D7FPF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-7
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0 
Query:  118 GSLWD-DKVDNSGPANVTGCTFDGNQATDGGAIYSSAGYDMVVNSSFSGNVA 168
            GS+W+ +  D+SGPAN T C F+ N A DGGAIYS+AGYD++ +S F  N+A
Sbjct:  393 GSVWNVESPDDSGPANTTTCVFERNSAEDGGAIYSAAGYDIISDSWFEDNIA 444
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BLAST of mRNA_H-elongata_contig596.13472.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 4.350e-5
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 0 
Query:  119 SLWDDKVDNSGPANVTGCTFDGNQATDGGAIYSSAGYDMVVNSSFSGNVA 168
            SL+DD    SG  N T C F GN A DGGA+YS+AGYD + +  F  N+A
Sbjct:  439 SLFDDDDPGSGSVNATMCVFQGNSAVDGGAMYSAAGYDGIKDCRFEDNLA 488
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig596.13472.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPF6_ECTSI1.240e-755.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWI3_9PHAE4.350e-552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 135..151
e-value: 0.0061
score: 17.0
coord: 45..61
e-value: 0.026
score: 15.0
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 43..65
e-value: 3.5E-6
score: 24.6
coord: 135..152
e-value: 1.7E-4
score: 19.3
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 13..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig596contigH-elongata_contig596:1106..3184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig596.13472.1mRNA_H-elongata_contig596.13472.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig596 1106..3184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig596.13472.1 ID=prot_H-elongata_contig596.13472.1|Name=mRNA_H-elongata_contig596.13472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
GAIALTAKSTLHIDGPAWFYSNEAKGNGGAIFLEYESTIHIDGPVSFYSN
EAKDNGGAIYASDSSLFVENGTQFVYNVAATASGGGVYSLRAVVSLKEAT
FTGNSGVWGGGVAHFSSGSLWDDKVDNSGPANVTGCTFDGNQATDGGAIY
SSAGYDMVVNSSFSGNVARRRTRWCPPALRRTSGVDREFI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence