prot_H-elongata_contig59581.13470.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59581.13470.1
Unique Nameprot_H-elongata_contig59581.13470.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length74
Homology
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.330e-9
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            +D  L  IGF PLKSD C+Y+Y+ +   V LTLYVDD+L    +   +S +KK+L  +FN++D+
Sbjct:  213 IDPLLVEIGFVPLKSDTCIYLYDHDDVQVYLTLYVDDLLLAGDNSNAISTIKKKLKQRFNMTDM 276          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.130e-8
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            +D  L  IGF PLKSD CVY+Y+ +   V LTLYVDD+L    +   +S +KK+L  +F ++D+
Sbjct:  733 IDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDM 796          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.540e-8
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            +D  L  IGF PLKSD CVY+Y+ +   V LTLYVDD+L    +   +S +KK+L  +F ++D+
Sbjct:  622 IDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDM 685          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5K9C7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.050e-8
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            +D  L V G++  +SDPCVY Y      VILT+YVDDIL     + L+ + KK L DQF ++D+
Sbjct:   72 LDDSLTVPGWKRTQSDPCVYGYTSGDIIVILTVYVDDILITGGDQQLVDQKKKDLTDQFEMTDM 135          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6G0X7I6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7I6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7
Identity = 23/57 (40.35%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    8 IGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            +GF  L  DPCV+++    GF I++LYVDD+L ++ + +L+S +K  L D+F++ D+
Sbjct: 1351 LGFTRLHKDPCVFLHTSSNGFTIVSLYVDDLLIIAPTTSLVSSMKLSLSDRFHMKDL 1407          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A438DLB2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DLB2_VITVI)

HSP 1 Score: 52.8 bits (125), Expect = 4.630e-7
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    8 IGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDIWAT 67
            IGF+  ++D C YI   +  ++IL LYVDD+L   +S   ++ LKKQL  QF + D+ AT
Sbjct:    4 IGFKRCEADHCCYIKSFDNSYIILLLYVDDMLIAGSSIEKINNLKKQLSKQFAMKDLGAT 63          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A2I0JT04_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JT04_PUNGR)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    9 GFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            GF+  + D CVYI E E G++IL LYVDDIL + +  +++   K  L  +FN+ D+
Sbjct:  118 GFKINECDKCVYIKETENGYIILCLYVDDILIVGSDDSMIKSTKNMLNSRFNMKDM 173          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6G0WNM5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNM5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.250e-6
Identity = 22/56 (39.29%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    9 GFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISDI 64
            GF  L  D CV+++  + GF I++LYVDD+L ++ + +L+S +K  L D+F + D+
Sbjct:  162 GFTRLHKDRCVFLHTSDDGFTIVSLYVDDLLIIAPTTSLVSSMKLSLFDRFQMKDL 217          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.300e-6
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFL 41
            +D  L  IGF PLKSD CVYIY+     V+LTLYVDD+L +
Sbjct:  465 IDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLII 505          
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Match: A0A1K0G6K2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ustilago bromivora TaxID=307758 RepID=A0A1K0G6K2_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 2.490e-6
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    1 MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSKLKKQLMDQFNISD 63
            +D +L   GF+  +++PCVY+   +   VIL +YVDD+L +  + +L+  +++QL   F+I+D
Sbjct:   52 LDKQLRAFGFKQCRAEPCVYVRGIKDAMVILAIYVDDLLVIGVTLSLVKPVRQQLSSVFSITD 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59581.13470.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT4_9PHAE2.330e-945.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KXM1_9PHAE1.130e-845.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.540e-845.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9C7_9PHAE3.050e-845.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0X7I6_9STRA1.020e-740.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A438DLB2_VITVI4.630e-743.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0JT04_PUNGR1.160e-642.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0WNM5_9STRA2.250e-639.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6R7_9PHAE2.300e-658.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A1K0G6K2_9BASI2.490e-634.92Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..64
e-value: 4.7E-8
score: 33.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59581contigH-elongata_contig59581:3239..3460 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59581.13470.1mRNA_H-elongata_contig59581.13470.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59581 2412..3634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59581.13470.1 ID=prot_H-elongata_contig59581.13470.1|Name=mRNA_H-elongata_contig59581.13470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MDVELAVIGFRPLKSDPCVYIYEDETGFVILTLYVDDILFLSASKTLLSK
LKKQLMDQFNISDIWATCRESSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2