prot_H-elongata_contig59333.13445.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig59333.13445.1
Unique Nameprot_H-elongata_contig59333.13445.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length102
Homology
[Close]
BLAST of mRNA_H-elongata_contig59333.13445.1 vs. uniprot
Match: D8LCM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM2_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 4.220e-33
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 0 
Query:    1 FQKLLDLHAEIVSKPWTWYAAWPPRFYRRLRQIQVLEYHLFRSVFVRLNRSLLTPAFDYARYSASIVNEIIIVFFDVNWASWLLAVVILFITLPISN 97
            F +L +L  E+    W  Y   PPR++  LRQ QVLEYHLFRSVF+RLNRSLLTPAFD+++YSA+IV+E I+VFFDV WASWLLAVV+LF T+PI++
Sbjct:   72 FDRLRELPGEMAPPDWKGYPGGPPRYFTGLRQAQVLEYHLFRSVFLRLNRSLLTPAFDFSKYSAAIVDEWIVVFFDVGWASWLLAVVVLFFTVPITD 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59333.13445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM2_ECTSI4.220e-3363.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..101
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availableTMHMMTMhelixcoord: 70..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59333contigH-elongata_contig59333:2566..3605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59333.13445.1mRNA_H-elongata_contig59333.13445.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig59333 2566..3605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig59333.13445.1 ID=prot_H-elongata_contig59333.13445.1|Name=mRNA_H-elongata_contig59333.13445.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
FQKLLDLHAEIVSKPWTWYAAWPPRFYRRLRQIQVLEYHLFRSVFVRLNR
SLLTPAFDYARYSASIVNEIIIVFFDVNWASWLLAVVILFITLPISNDGV
S*
back to top