prot_H-elongata_contig5917.13428.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5917.13428.1
Unique Nameprot_H-elongata_contig5917.13428.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length67
Homology
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A835Z8L8_9STRA (GTPase of the U5 snRNP particle n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.970e-20
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFCTQVF+HW+IVPGDPLDRNI+LHPLEPSPPQH A +FMV      RRK +    S+   FD
Sbjct:  892 QGQAFCTQVFDHWSIVPGDPLDRNIVLHPLEPSPPQHLARDFMVKTR---RRKGLSEDVSINKFFD 954          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.220e-19
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSV 49
            QGQAFCTQVF+HW+IVPGDPLDRNIILHPLEPSPPQH A EFMV   V
Sbjct:  887 QGQAFCTQVFDHWSIVPGDPLDRNIILHPLEPSPPQHLAREFMVRCGV 934          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S2V928_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V928_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.490e-19
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFCTQVF+HW+IVPGDPLDR+I+LHPLEPSPP H A EFMV      RRK +    S+   FD
Sbjct:  285 QGQAFCTQVFDHWSIVPGDPLDRSIVLHPLEPSPPPHLAREFMVKTR---RRKGLSEDVSINKFFD 347          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: F0Y0W1_AURAN (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0W1_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 2.960e-16
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQA C+QVF+HW + PGDPLDR+IILHPLEPSPP H A EFMV      RRK +    S+   FD
Sbjct:  919 QGQAMCSQVFDHWAVCPGDPLDRSIILHPLEPSPPPHLAREFMVKTR---RRKGLSEDVSIAKFFD 981          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A446YNP1_TRITD (EFG_C domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446YNP1_TRITD)

HSP 1 Score: 75.1 bits (183), Expect = 5.800e-16
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFC  VF+HW IVPGDPLD+ I+L PLEP+P QH A EFMV      RRK +    S+   FD
Sbjct:   33 QGQAFCVSVFDHWAIVPGDPLDKGIVLRPLEPAPIQHLAREFMVKTR---RRKGMSEDVSINKFFD 95          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A388KDW5_CHABU (Tr-type G domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KDW5_CHABU)

HSP 1 Score: 79.7 bits (195), Expect = 7.540e-16
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFC  VF+HW++VPGDPLD++I+L PLEP+PPQH A EFMV      RRK +    S+   FD
Sbjct:  816 QGQAFCMSVFDHWSVVPGDPLDKSIVLRPLEPAPPQHLAREFMVKTR---RRKGMSEDVSINKFFD 878          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S3NFY3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NFY3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.550e-16
Identity = 40/65 (61.54%), Postives = 44/65 (67.69%), Query Frame = 0
Query:    3 GQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            GQA CTQ F+HW I PGDPLDR+IILHPLEPSPP H A EFMV      RRK +    S+   FD
Sbjct:  899 GQAMCTQTFDHWAICPGDPLDRSIILHPLEPSPPPHLAREFMVKTR---RRKGLSEDTSIAKYFD 960          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A7S0RH35_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RH35_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 1.400e-15
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFCT  F+HW+IVPGDPLDR+I+L PLEP+P QH A EFMV      RRK +    S+   FD
Sbjct:  581 QGQAFCTSYFDHWSIVPGDPLDRSIVLRPLEPAPVQHLAREFMVKTR---RRKGMNEDVSINQFFD 643          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A445AVT8_ARAHY (EFG_C domain-containing protein n=2 Tax=rosids TaxID=71275 RepID=A0A445AVT8_ARAHY)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFC  VF+HW IVPGDPLD++I+L PLEP+P QH A EFMV      RRK +    S+   FD
Sbjct:   70 QGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTR---RRKGMSEDVSISKFFD 132          
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Match: A0A835HTV3_9MAGN (EFG_C domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HTV3_9MAGN)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-15
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    2 QGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVHGRRKAIRSLGSVGDGFD 67
            QGQAFC  VF+HW+IVPGDPLD+NI++ PLEP+P QH A EFMV       RK +    S+   FD
Sbjct:  112 QGQAFCVSVFDHWSIVPGDPLDKNIVIRPLEPAPIQHLAREFMVKTR---HRKGMSEDVSINKFFD 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5917.13428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z8L8_9STRA8.970e-2066.67GTPase of the U5 snRNP particle n=1 Tax=Tribonema ... [more]
A0A6H5L308_9PHAE1.220e-1985.42Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2V928_9STRA5.490e-1965.15Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y0W1_AURAN2.960e-1660.61116 kDa U5 small nuclear ribonucleoprotein compone... [more]
A0A446YNP1_TRITD5.800e-1657.58EFG_C domain-containing protein n=2 Tax=Triticum t... [more]
A0A388KDW5_CHABU7.540e-1657.58Tr-type G domain-containing protein n=1 Tax=Chara ... [more]
A0A7S3NFY3_9STRA7.550e-1661.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0RH35_9CHLO1.400e-1559.09Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A445AVT8_ARAHY1.460e-1557.58EFG_C domain-containing protein n=2 Tax=rosids Tax... [more]
A0A835HTV3_9MAGN1.770e-1556.06EFG_C domain-containing protein n=1 Tax=Coptis chi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.240coord: 2..25
e-value: 3.3E-6
score: 28.4
NoneNo IPR availablePANTHERPTHR42908FAMILY NOT NAMEDcoord: 2..46
NoneNo IPR availablePANTHERPTHR42908:SF6116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENTcoord: 2..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5917contigH-elongata_contig5917:2021..2593 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5917.13428.1mRNA_H-elongata_contig5917.13428.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5917 446..2593 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5917.13428.1 ID=prot_H-elongata_contig5917.13428.1|Name=mRNA_H-elongata_contig5917.13428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MQGQAFCTQVFNHWNIVPGDPLDRNIILHPLEPSPPQHHATEFMVHLSVH
GRRKAIRSLGSVGDGFD
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