prot_H-elongata_contig5910.13423.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5910.13423.1
Unique Nameprot_H-elongata_contig5910.13423.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length391
Homology
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BLAST of mRNA_H-elongata_contig5910.13423.1 vs. uniprot
Match: A0A6H5L0W0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0W0_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 3.430e-99
Identity = 160/359 (44.57%), Postives = 237/359 (66.02%), Query Frame = 0 
Query:    1 MVLVSIAAMACASGAIWGLQRTDVG-------TQGISSDVVAVLSLPNDTADALEGVSTSFDALLDGFGSCTNSVLVDTVLGSSSDYMESLVNDLQGEVEQLNREILNQLANEVQGATDSIDTTEGIRNGLVWPVISLSMLIVAIFFMIAIGTYECVPWGVKDYGCFSRCVSPFTIFLAAVIWLSTAAVIALSALSGDFCIDPDSSAQTFLVENQDEDETFAELVMYYTGDCTADNTVVDLITTSQELAKPFIGTILVAAYATVSVCDHMSSFAEELDQTLLNMWTILEDAAELTSCENLNGQYQSVVYDEFCDKLPRGLLGFWVSCIILTAFLLMLAALWAKMLWQKRADNQGGVMEA 352
            MVL S+AA+A A+GAIWGLQR D G       TQ +++D++ +L+L NDT+ AL+ V+ S++AL +    C N  ++ ++L +    + SL   +Q E++ ++ +   +LA++VQ  +D++  TEG R GL+WPV+ LS++  A F  +++ TYECV +G +D    S C++P TIF+A VIW+  A  ++LSAL+GDFCIDPD++A   + +N D +   A+L+ YYTGDCT++N  VD I T+QE+A P I +++   Y   + C  ++   + LD +L + WTILEDA EL+SCENLNG YQ+ VYDE C  LP+GLLGFWVSC  LT  LL+LA  W +ML Q+  +      EA
Sbjct:  111 MVLASVAAIASAAGAIWGLQRADSGLTNIEDATQNMATDMLTILNLANDTSVALDQVTASYEALQESVDGCDNGAILSSLLDAFD--INSLTASVQAEIDDVSEDNFGELADDVQAISDAVSDTEGARKGLLWPVLILSLMFTAFFVAVSVSTYECVAFGYRDCAPASCCINPCTIFVAVVIWICAALAVSLSALTGDFCIDPDANANELITDNTDGE--IADLITYYTGDCTSENAAVDAIITAQEVAVPIIQSVVPTLYQLEAACSDLAEPVQTLDNSLESFWTILEDAGELSSCENLNGLYQAAVYDELCKGLPQGLLGFWVSCAFLTVLLLILAIQWGRMLRQQTTEEDASTAEA 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5910.13423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0W0_9PHAE3.430e-9944.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 78..105
NoneNo IPR availablePANTHERPTHR12424:SF8PROTEIN TWEETY-RELATEDcoord: 71..349
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 336..390
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 148..166
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 189..313
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 167..188
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 314..335
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..123
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..147
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.512
NoneNo IPR availableTMHMMTMhelixcoord: 245..267
NoneNo IPR availableTMHMMTMhelixcoord: 166..188
NoneNo IPR availableTMHMMTMhelixcoord: 313..335
NoneNo IPR availableTMHMMTMhelixcoord: 124..146
IPR006990TweetyPANTHERPTHR12424TWEETY-RELATEDcoord: 71..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5910contigH-elongata_contig5910:7151..9866 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5910.13423.1mRNA_H-elongata_contig5910.13423.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5910 7107..11265 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5910.13423.1 ID=prot_H-elongata_contig5910.13423.1|Name=mRNA_H-elongata_contig5910.13423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=391bp
MVLVSIAAMACASGAIWGLQRTDVGTQGISSDVVAVLSLPNDTADALEGV
STSFDALLDGFGSCTNSVLVDTVLGSSSDYMESLVNDLQGEVEQLNREIL
NQLANEVQGATDSIDTTEGIRNGLVWPVISLSMLIVAIFFMIAIGTYECV
PWGVKDYGCFSRCVSPFTIFLAAVIWLSTAAVIALSALSGDFCIDPDSSA
QTFLVENQDEDETFAELVMYYTGDCTADNTVVDLITTSQELAKPFIGTIL
VAAYATVSVCDHMSSFAEELDQTLLNMWTILEDAAELTSCENLNGQYQSV
VYDEFCDKLPRGLLGFWVSCIILTAFLLMLAALWAKMLWQKRADNQGGVM
EAREDLSLSRDLNSLRWPGQKAKGPEDPVSGIRPVESASL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006990Tweety