prot_H-elongata_contig5872.13366.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5872.13366.1
Unique Nameprot_H-elongata_contig5872.13366.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length1042
Homology
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Match: A0A6H5KLQ2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ2_9PHAE)

HSP 1 Score: 541 bits (1394), Expect = 3.490e-168
Identity = 473/1274 (37.13%), Postives = 595/1274 (46.70%), Query Frame = 0
Query:    1 ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCKDARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAVERWGRDSTTRE------LTSDPDRSRGVVTRSATPGGEINPPHCTGKYNSRGNNHDRGAGVFPGKKRTTESIFSQDQYLPPPS--------------FETGGSATKTPRVRGGSCSPTVSFNQWRRMTRRWGSVDETRPSAVAGARG-------------NGH-------------IVRRSLADETSWNADRNG-RASQRGCNLVSTLRSLLVRDDFSDEAIRRSLQQAPGRRG-----WGRHIHGLQRQKNDAHAASSGAGKSKEARGGAD--RRNTPSRGEPHSANPSSVSAN---------------------VKNIRGRGEENASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADLSASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHLLDNLEAREAGLTGEEVE-------------WERPRRDKVKSHDAGTMDIT----------------MPEAAGFRPRTGHRRYSKKN-HDATESVLV-GDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVFGFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKYRDLT---------------------------------------QTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIPE-----NDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEMFQRQGGA---GKRDTAEMKQSVAC--------------KSPS-LHPLALRRGLSSLGVPLGDDDFVAIVAAADPDRRGEVSYVDFYKSMWPHQLRDD--------HGVTTEMRPTSTPP--SLSSQSFDQDMSSDNLVSARNIEKAVQSENT-------RQITMDLAPPADM--NLDGGIFHRNPATDGCTNPNFTTTMINSWVIG------------KYRSKRRQPP--------TRARSSPHTLPGSLVKNGPFGVEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGWDSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSM------------RGHRYESLHSWRRS-------------RSLSLDANMRYGHRARSTVQHLLRDDSWL 1042
            A PP PP RALELVKEEV+RALKAFST+P+KG   +P PSDLLRPFDV KD RVTY EF  G+ GLG+GLTA E+E+LA+ VD + TGLVDR  FE AA   WG  S+ R+       TS P    G V      GG +   H  G++ S     D G+ V  G+K      ++  + LPPP                ET G   +  R RG S   T+SF+ W++   R    +    + VA                 NGH                      + +N   N  + SQ+    + TLRSLL RD   DE     +     +       +G  I G +R++     +   AG      GG D  +R   SR E   +      A+                            G+ N    +  ++    L  ++A A+RAEK L LRSRGDLVGLRRA S+AD SASGV+S  EMER ILRRFG GL D EAR LAA YR D+ G +MVDY  L DN+E +E G+ G  V              WE  +    +    GT   +                M  AAG R R   RRY ++   DA +   V G  P E SQLVRRAR KTLALLD+HGTRS+D VFG +D A T  VN+ E R+ LR+L G+D LS+IE++ LF+ +   + RI YRD T                                        TLRA++  E  E TQRK+  QA LP+ GRGS IH RHS +LD+          + S   GL GGR+H E RR+ALV QRLRD VK+IQ  +N A P+++MF+++G A   G  D A                      ++PS L P ALR GL SLGVPLGD+DF  ++AA DPDRRG+VSY  F +++  H LR D         G   E RP+S PP  + S Q   Q                             R+  M+LAPPAD   +L+GG+FH N AT GC NPNFTTTM+ +   G             YR KRRQ P        T  R+  H     +V +G     G   Q    T  EAE  FR+ LG+KMR                    W             D    G GH   RGR++TP+++DLGFGSERMRS S             R  R      WRR+             RSLSL A  RYG  ARS+VQHLLR D WL
Sbjct:   80 APPPVPPPRALELVKEEVHRALKAFSTKPVKGEPKAPLPSDLLRPFDVSKDGRVTYREFRTGILGLGIGLTAHEAEALAQVVDREGTGLVDRGPFEAAATRDWG--SSGRDGGWQGRPTSAPGSVPGAVAEPQIGGGAL---HSPGEHTSHPQVDD-GSIVRDGEKG-----YAGGEVLPPPPTPSEAPEPLRQWSRLETTG---RPSRNRGPS---TLSFDCWQQNANRRNESNNAADAVVAKTPASTGSSIGRSDGNVNGHHKHSRDTSTXXXXXXXXXXXXNSDYNTHNNNLQPSQKYLQSLQTLRSLLQRDGVFDEVKSTPIADETNKSNERSLSFGTEIRGRRRERRLQEQSQHQAGSRLSGGGGGDGKQRVDLSRVEHRRSREEDCRADSPXXXXXXXXXXXXXXXXXXXXXXXXSTGKTNVVVSD--TEAPDHLARAQAVAARAEKILQLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDDEARHLAACYRKDFNGRSMVDYGRLFDNMEVQEGGVYGRGVTPSPGPSKSSGRGCWEDQQHSSSRDGGGGTRARSASVSAAGEXRRRGSRPMRAAAGGRTRHSQRRYWRRGVPDAADDNFVRGGAPAEASQLVRRARAKTLALLDRHGTRSVDCVFGLVDQAHTQTVNSGELREALRILGGSDTLSEIEHRALFKGISKGRDRIHYRDKTYPNTQRYSRGPAASVVATTCFIYTLFFGTPLVLHKQELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGGRKGSRGVGLKGGRQHKESRRQALVFQRLRDGVKQIQEKQNSAWPVFDMFRQRGRARAGGYCDAAAXXXXXXXXXXXXTINNDDDPDRTPSPLSPSALRAGLGSLGVPLGDEDFDTLIAATDPDRRGKVSYPTFCEALDLHPLRGDPPDAHRTASGSEEEERPSSAPPVPTKSRQHNRQXXXXXXXXXXXXXXXXXXXXXXXXXGGYIRRRAMELAPPADAREDLEGGVFHVNEATCGCANPNFTTTMVPASTGGGCRANNNRPRPDSYRPKRRQSPAPAPGGTLTGVRTKSHGQTLLVVGSGGGDRVGLRDQ----TGLEAERRFRQGLGIKMR-------------------AWSD-----------DNNTGGRGH--RRGRSHTPRDSDLGFGSERMRSTSRCDDDEDCRGGGGRRERRSGSVGWRRTGTNGDVGPGLRRVRSLSLGAERRYGDWARSSVQHLLRQDGWL 1298          
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Match: D8LB86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB86_ECTSI)

HSP 1 Score: 509 bits (1312), Expect = 2.890e-157
Identity = 436/1183 (36.86%), Postives = 559/1183 (47.25%), Query Frame = 0
Query:    1 ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCKDARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAVERWGRDST-----TRELTSDPDRSRGVVTRSATPGGEINPP--HCT------GKYNSRGNNHDRGAGVFPGKKRTTESIFSQDQYLPPPSFETGGSATKTPRVRGGSCSPTVSFNQWRRMTRRWGSVDETRPSAVAGARGNGHIV-----------------------------RRSLADETSWNADRNGRASQRGCNLVSTLRSLLVRDDFSDEAI------------RRSLQQAPGRRG---------WGRHIHGLQRQKNDAHAASSGAGKSKEARGGADRRNTPSRGEPHSANPSSVSANVKNIRGRGEE------------NASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADLSASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHLLDNLEAREAGLTGEEVE-------------WERPRRDK---------VKSHDAGTM-------DITMPEAAGFRPRTGHRRYSKKN-HDATESVLV-GDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVFGFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKYRDLTQTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIPE-----NDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEMFQRQGGAGKRDTAEMKQSVACKS-----------------PSLHPLALRRGLSSLGVPLGDDDFVAIVAAADPDRRGEVSYVDFYKSMWPHQLRDD--------HGVTTEMRPTSTPPSLSSQSFDQDMSSDNLVSARNIEKAVQSENT------------RQITMDLAPPADM--NLDGGIFHRNPATDGCTNPNFTTTMINSWVIG------------KYRSKRRQPPTRA--------RSSPHTLPGSLVKNGPFGVEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGWDSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSMRGHRYESLHSWRRS 1013
            A PP PP RALELVKEEV+RALKAFST+P+KG   +P PSDLLRPFDV KD RVTY E   G+ GLG+GLTA E+E LA+ VD + TGLVDR  FE AA   WG             TS P R  G V  S +  G ++ P  H +      G+    G     G  V P     +E+     Q+      ET G   +  R  G S   T+SF+ W++   R    +    + V                                       + S +D  + N   N + SQ+    + TLRSLL  D   DE              RRSL      RG           +H  GL+         S G G  K+        +   R E   A+                             N S     ++    L  +R+ A+RAE  L LRSRGDLVGLRRA S+AD SASGV+S  EMER ILRRFG GL D EAR LAA+YR D+ G +MVDY  L D+LE +E  L G  V              WE  +R            +S    T           M  AAG R R   RRY ++   DA  +  V G  P E+SQLVRRAR KTLALLD+HGT S+D VFG +D A T  V++ E R+ LR+L G+D LS+IE++ LF+ +   + R+ YR+L  TLRA++  E  E TQRK+  QA LP+ GRGS IH RHS +LD+        + + S   GL GGR+H E RR+ALV QRLRD V++IQ  +N AGP+++MF+R+G       ++   +VA  +                 P L P ALR GL SLGVPLG++DFV ++AA DPDRRGEV+Y  F +++  H LR D         G   + RP+                               + +             R+  M+LAPPAD   +L+GG+FH N AT GC NPNFTTTM+ + + G             YR KRRQ P  A        R+  H     +V +G     G   Q    T  EAE  FR+ LG+KMR                    W       P   PV   ++G G GN RGR++TP+++DLGFGSERMRS S  G    S H  RRS
Sbjct:  118 APPPVPPPRALELVKEEVHRALKAFSTQPVKGEPKAPLPSDLLRPFDVSKDGRVTYRELRTGILGLGIGLTAREAEELAQVVDREGTGLVDRGHFEAAATRDWGSGGGGDGGWQGRPTSAPGRVXGAVAESQSESGALHSPGEHASHPQVDDGRIAHDGEKGCAGGEVLPPPPTPSEAPEPLRQWS---RSETTG---RPSRNHGPS---TLSFDYWQQNANRRNDSNNAANAVVTNTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKSSNSDYNTHN--NNQQLSQKYIQSLQTLRSLLQLDRVFDEVKSTPIADETNKPNRRSLSFGTETRGRRCERRRQEQSQHQSGLRPSGXXXXXXSCGVGDGKQRVDSTKVEHRRFREEDGRADSPXXXXXXXXXXXXXXXXXXXXXXXXXTGNTSVVVSDTEAPDHLARARSVAARAESILRLRSRGDLVGLRRAVSKADPSASGVISRREMERVILRRFGTGLEDHEARHLAARYRKDFNGRSMVDYGRLFDSLEVKEGDLFGRGVTSSPGPSTSSGRGCWEAQQRSSSXXXXXXXXARSAPTSTAGEGRRRGSRPMRAAAGARTRHSQRRYWRRGVPDAAAADFVRGGAPAEESQLVRRARAKTLALLDRHGTPSVDCVFGLVDQAHTQTVSSGELREALRILGGSDTLSEIEHRALFKGISKGRDRVLYRELLDTLRASEVAEHRERTQRKLQHQAGLPTSGRGSAIHWRHSDVLDWDAPPAGGGDRKGSCGVGLKGGRQHKESRRQALVFQRLRDGVRQIQEKQNSAGPVFDMFRRRGRGRTGGYSDAAATVAAPTTSGNGTMNNDNDPVRTPPPLSPSALRAGLGSLGVPLGNEDFVTLIAATDPDRRGEVTYPTFCEALDLHPLRGDPSDAHRTASGSEEQERPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDAGKGRREGXXGYARRRAMELAPPADTREDLEGGVFHVNEATYGCDNPNFTTTMVPASIGGGCKANNNHPRPDAYRPKRRQSPAPAPGGTLTGIRTKSHGQTLLVVGSGGGDRVGLRDQ----TGLEAERRFRQGLGVKMR-------------------AWSGDNNTDP--TPV---LNG-GRGNRRGRSHTPRDSDLGFGSERMRSTSSDG---VSKHCRRRS 1257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5872.13366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLQ2_9PHAE3.490e-16837.13EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LB86_ECTSI2.890e-15736.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 57..95
e-value: 0.033
score: 14.0
NoneNo IPR availableGENE3D1.10.238.10coord: 9..111
e-value: 1.1E-5
score: 27.5
NoneNo IPR availablePANTHERPTHR20875FAMILY NOT NAMEDcoord: 391..778
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 399..411
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 45..771

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5872contigH-elongata_contig5872:1323..5761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5872.13366.1mRNA_H-elongata_contig5872.13366.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5872 1323..5761 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5872.13366.1 ID=prot_H-elongata_contig5872.13366.1|Name=mRNA_H-elongata_contig5872.13366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1042bp
ASPPAPPQRALELVKEEVNRALKAFSTRPLKGFTCSPRPSDLLRPFDVCK
DARVTYPEFYAGLRGLGVGLTADESESLAREVDNDDTGLVDRKMFETAAV
ERWGRDSTTRELTSDPDRSRGVVTRSATPGGEINPPHCTGKYNSRGNNHD
RGAGVFPGKKRTTESIFSQDQYLPPPSFETGGSATKTPRVRGGSCSPTVS
FNQWRRMTRRWGSVDETRPSAVAGARGNGHIVRRSLADETSWNADRNGRA
SQRGCNLVSTLRSLLVRDDFSDEAIRRSLQQAPGRRGWGRHIHGLQRQKN
DAHAASSGAGKSKEARGGADRRNTPSRGEPHSANPSSVSANVKNIRGRGE
ENASTDEGASKPASALDLSRAYASRAEKTLMLRSRGDLVGLRRAFSRADL
SASGVLSSMEMERSILRRFGAGLGDREARALAAQYRVDYRGHNMVDYVHL
LDNLEAREAGLTGEEVEWERPRRDKVKSHDAGTMDITMPEAAGFRPRTGH
RRYSKKNHDATESVLVGDVPLEKSQLVRRARNKTLALLDQHGTRSIDRVF
GFIDNARTGIVNAEEFRDGLRVLSGTDPLSDIEYKVLFRDVCTDKGRIKY
RDLTQTLRAAKAKESWESTQRKMARQAELPSGGRGSGIHLRHSKILDYIP
ENDEVSVVPGLSGGRRHMEWRRRALVLQRLRDRVKKIQGDRNGAGPLYEM
FQRQGGAGKRDTAEMKQSVACKSPSLHPLALRRGLSSLGVPLGDDDFVAI
VAAADPDRRGEVSYVDFYKSMWPHQLRDDHGVTTEMRPTSTPPSLSSQSF
DQDMSSDNLVSARNIEKAVQSENTRQITMDLAPPADMNLDGGIFHRNPAT
DGCTNPNFTTTMINSWVIGKYRSKRRQPPTRARSSPHTLPGSLVKNGPFG
VEGRSPQRWSETSEEAEVTFRRRLGMKMRRPHSYSSAPSFAKRHESCGGW
DSIGILSPRQAPVDYAVDGYGHGNLRGRAYTPKNNDLGFGSERMRSDSMR
GHRYESLHSWRRSRSLSLDANMRYGHRARSTVQHLLRDDSWL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair