prot_H-elongata_contig58693.13361.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58693.13361.1
Unique Nameprot_H-elongata_contig58693.13361.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.400e-39
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREIL+RIRE+EKLD
Sbjct:   72 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.330e-36
Identity = 64/72 (88.89%), Postives = 71/72 (98.61%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EIL+R+RELEKL+
Sbjct:   72 VDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.890e-32
Identity = 57/72 (79.17%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EILERI+E+EK +
Sbjct:   75 IDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEKRE 146          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A482SEH0_9ARCH (Clat_adaptor_s domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEH0_9ARCH)

HSP 1 Score: 112 bits (281), Expect = 4.310e-31
Identity = 54/71 (76.06%), Postives = 66/71 (92.96%), Query Frame = 0
Query:    2 DVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            DV DNELL +ET+H+FVELL+ YFSNVCELDIVF+FNKVY +LDEFIL+GE++E+SKR ILER+RELEKL+
Sbjct:   16 DVTDNELLLMETIHIFVELLDVYFSNVCELDIVFHFNKVYTLLDEFILAGEIQETSKRVILERVRELEKLE 86          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.480e-30
Identity = 55/72 (76.39%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREIL+R++ LEK++
Sbjct:   82 VDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A6T8NVY6_9STRA (AP complex subunit sigma n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NVY6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.580e-30
Identity = 54/72 (75.00%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDEF+L+GE+EE+SKREILER++ +EK+D
Sbjct:   85 VDMTDNELNYLETIHLFVELLDSYFSNVCELDIVFNFNRVYAILDEFMLAGEIEETSKREILERVKVIEKMD 156          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 112 bits (279), Expect = 5.650e-30
Identity = 53/72 (73.61%), Postives = 69/72 (95.83%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DVNDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNKVY+ILDEF+L+GE+EE+SKREIL+R++ L+K++
Sbjct:   80 VDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNKVYSILDEFMLAGEIEETSKREILDRVKLLDKME 151          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 111 bits (277), Expect = 8.820e-30
Identity = 53/72 (73.61%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNKVY+ILDE++L+GE+EE+SK+EIL+R++ LEKLD
Sbjct:   71 VDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKVYSILDEYMLAGEIEETSKKEILDRVKFLEKLD 142          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV)

HSP 1 Score: 113 bits (283), Expect = 1.060e-29
Identity = 55/72 (76.39%), Postives = 68/72 (94.44%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +DVNDNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+ E+SKREILER++ LEK++
Sbjct:  157 VDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIGETSKREILERVKVLEKVE 228          
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.110e-29
Identity = 53/72 (73.61%), Postives = 67/72 (93.06%), Query Frame = 0
Query:    1 MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 72
            +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EIL+R++ LEKL+
Sbjct:   79 VDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58693.13361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI2.400e-3997.22AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA5.330e-3688.89AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA3.890e-3279.17AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A482SEH0_9ARCH4.310e-3176.06Clat_adaptor_s domain-containing protein n=1 Tax=a... [more]
A0A7S3L6S1_9STRA1.480e-3076.39AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A6T8NVY6_9STRA4.580e-3075.00AP complex subunit sigma n=1 Tax=Proboscia inermis... [more]
A0A1Z5K077_FISSO5.650e-3073.61AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
B8C940_THAPS8.820e-3073.61AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]
A0A7S2A2C1_TRICV1.060e-2976.39AP-2 complex subunit sigma n=1 Tax=Trieres chinens... [more]
A0A7S0FJC4_9STRA1.110e-2973.61AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..71
e-value: 1.6E-24
score: 86.4
NoneNo IPR availableGENE3D3.30.450.60coord: 1..72
e-value: 2.0E-25
score: 91.2
NoneNo IPR availablePANTHERPTHR11753:SF44AP-2 COMPLEX SUBUNIT SIGMAcoord: 2..72
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 2..72
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 2..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58693contigH-elongata_contig58693:2612..3314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58693.13361.1mRNA_H-elongata_contig58693.13361.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58693 2141..3373 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58693.13361.1 ID=prot_H-elongata_contig58693.13361.1|Name=mRNA_H-elongata_contig58693.13361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILS
GEVEESSKREILERIRELEKLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf