prot_H-elongata_contig58692.13360.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58692.13360.1
Unique Nameprot_H-elongata_contig58692.13360.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length113
Homology
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BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.550e-32
Identity = 75/126 (59.52%), Postives = 86/126 (68.25%), Query Frame = 0 
Query:    1 MAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKLEASLADE---------NVAEGATRGA-TDSKDARPPPQTPTLGRERSMSSLWGVEVHHLYCLSLSPWLGPG---GPRDEALGP 113
            MAVA+ DGTVLL RVERYTSG+R+ HKL IS+SM+HR DSH+LE  LADE         +V+EG  +G  T   DAR    T T  RE +MSSLWGVEVHHL CLSL PWLGPG   G  +  LGP
Sbjct:  422 MAVALADGTVLLARVERYTSGVRARHKLQISNSMLHRSDSHRLEDYLADETLRAEQGLGDVSEGDGKGGVTSPPDAR----TRTFSREGTMSSLWGVEVHHLNCLSLDPWLGPGDGGGGGESLLGP 543
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BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.440e-10
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = 0 
Query:    1 MAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKL------------EASLADENVAEGATR-GATDSKDARPP-----PQTPTLGRERSMSSLWGVEVHHLYCLSLSPWLGPGG 105
            +AVA+ DG+VLL+RVER+TSG R+   L +   + +R +S +L            E + A  ++A GA   G + S  +  P     P TP   ++R +++L GVE+H L+ LSL P+L  GG
Sbjct:  169 LAVALGDGSVLLSRVERFTSGARAGDGLRVMSGLENRRNSFRLDPAERLDPADAAELAAATLDIAGGAEGLGGSGSFQSDVPGGGHAPDTPRSAQQRGIATLAGVEIHQLHSLSLGPYLAAGG 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58692.13360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI3.550e-3259.52SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA6.440e-1036.59RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58692contigH-elongata_contig58692:2312..3545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58692.13360.1mRNA_H-elongata_contig58692.13360.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58692 2283..3545 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58692.13360.1 ID=prot_H-elongata_contig58692.13360.1|Name=mRNA_H-elongata_contig58692.13360.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
MAVAIVDGTVLLTRVERYTSGLRSYHKLHISDSMVHRFDSHKLEASLADE
NVAEGATRGATDSKDARPPPQTPTLGRERSMSSLWGVEVHHLYCLSLSPW
LGPGGPRDEALGP
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