prot_H-elongata_contig58676.13356.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58676.13356.1
Unique Nameprot_H-elongata_contig58676.13356.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
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BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Match: A0A6H5KU01_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU01_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.150e-13
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:   14 GDLRPAALRAFEALDRNKSGQISRRDFRRALEDMGFN-LGDDEAEEILDHFDPH 66
            G+ +PA LRAFE+ DR+ SG++SRRDFRRAL ++GF+ LGD+EA EILD FDPH
Sbjct:  439 GEGKPATLRAFESFDRDGSGRVSRRDFRRALRELGFDRLGDEEAAEILDRFDPH 492
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BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Match: D8LSF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.410e-12
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0 
Query:   18 PAALRAFEALDRNKSGQISRRDFRRALEDMGFN-LGDDEAEEILDHFDPH 66
            P  LRAFE+ DR+ SG++SRRDFRRAL ++GF+ LGD+EA EILD FDPH
Sbjct:  411 PGTLRAFESFDRDGSGRVSRRDFRRALRELGFDRLGDEEAAEILDRFDPH 460
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58676.13356.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU01_9PHAE1.150e-1366.67EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSF6_ECTSI1.410e-1268.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 20..66
e-value: 1.3E-7
score: 32.0
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 51..67
score: 5.671
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 15..50
score: 12.226
NoneNo IPR availableGENE3D1.10.238.10coord: 14..67
e-value: 1.7E-12
score: 49.0
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 28..40
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 17..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58676contigH-elongata_contig58676:750..953 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58676.13356.1mRNA_H-elongata_contig58676.13356.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58676 750..953 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58676.13356.1 ID=prot_H-elongata_contig58676.13356.1|Name=mRNA_H-elongata_contig58676.13356.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
LVRRNDGSGRSLCGDLRPAALRAFEALDRNKSGQISRRDFRRALEDMGFN
LGDDEAEEILDHFDPHR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair