prot_H-elongata_contig5862.13353.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig5862.13353.1
Unique Nameprot_H-elongata_contig5862.13353.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length215
Homology
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BLAST of mRNA_H-elongata_contig5862.13353.1 vs. uniprot
Match: D7G2I8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 4.470e-49
Identity = 96/161 (59.63%), Postives = 124/161 (77.02%), Query Frame = 0 
Query:   58 MQG-NSREDADFEMTVDWDEELRKLNAAQYTKKRAERAQSEAN-PDVVTWAKTSARKAQSAAQDTSYKVRGAMRESSRWQQLSRDYRFWLALVAGISLLASILSATSRTQDLIVWN-TLGEGTDGDAHVFAFAMLVAAQTAHAAGDTASQLADTGA-MVFA 214
            M+G N REDADFEMTVDWDEELRKLNA+QY K++      + N P+ V WA+ +A+ AQSA +D + +VRGAMR++ RWQ LSRDYRFWL LV  +SL++S++SA+ R+ DL+VWN  LG    G+A +FA A L+AA TAH+AGD A+QLA+TGA MVFA
Sbjct:    1 MEGVNPREDADFEMTVDWDEELRKLNASQYGKRQERDLTKDMNDPEAVKWARKNAKIAQSAMEDRTKQVRGAMRKAPRWQTLSRDYRFWLGLVVALSLVSSVISASGRSHDLVVWNDVLGSEPFGEA-LFAHAALLAATTAHSAGDAATQLAETGAAMVFA 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5862.13353.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2I8_ECTSI4.470e-4959.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..15
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 161..214
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..140
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.775

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5862contigH-elongata_contig5862:4336..6722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5862.13353.1mRNA_H-elongata_contig5862.13353.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig5862 4331..9006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig5862.13353.1 ID=prot_H-elongata_contig5862.13353.1|Name=mRNA_H-elongata_contig5862.13353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=215bp
MVSLRLTLVCLGVCLPSVVKAFCLLHNRGLIVSRSTASHLLLHKSGQVVP
ERRCSLVMQGNSREDADFEMTVDWDEELRKLNAAQYTKKRAERAQSEANP
DVVTWAKTSARKAQSAAQDTSYKVRGAMRESSRWQQLSRDYRFWLALVAG
ISLLASILSATSRTQDLIVWNTLGEGTDGDAHVFAFAMLVAAQTAHAAGD
TASQLADTGAMVFA*
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