prot_H-elongata_contig58559.13344.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58559.13344.1
Unique Nameprot_H-elongata_contig58559.13344.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length153
Homology
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.760e-66
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0
Query:    6 SIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRV 132
            S+GSF  FKAHEFV H+GKTNCV VGP SGQVLATGGDDK V VWRIGRA+SIWSL GN+S IESLRFD TEEFLVSGSAGGAVKLFDLSAGKMTR+FRGHMSNVTVIDCGSFDRRFV TGSMDC+V
Sbjct:    8 SLGSFAGFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSGIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFVTTGSMDCQV 134          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 2.560e-61
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0
Query:    6 SIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFV 123
            S+GSF AFKAHEFV H+GKTNCV VGP SGQVLATGGDDK V VWRIGRA+SIWSL GN+SAIESLRFD TEEFLVSGSAGGAVKLFDLSAGKMTR+FRGHMSNVTVIDCGSFDRRFV
Sbjct:    8 SLGSFAAFKAHEFVAHAGKTNCVAVGPRSGQVLATGGDDKRVNVWRIGRASSIWSLTGNSSAIESLRFDPTEEFLVSGSAGGAVKLFDLSAGKMTRHFRGHMSNVTVIDCGSFDRRFV 125          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A836CLK5_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK5_9STRA)

HSP 1 Score: 197 bits (502), Expect = 2.130e-57
Identity = 95/141 (67.38%), Postives = 110/141 (78.01%), Query Frame = 0
Query:   13 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNAEV 153
            FKAHEFV HS K NCV +GP  G VLATGG+DK V VW+IGRAN IWSL GN+S IE + FD  EE L SGS+GGAVK +DL+ GKM RNFRGHMSNVT +  G+FD  ++ATG++DC VK+WN  TKEC MAFKGH AEV
Sbjct:   13 FKAHEFVAHSTKVNCVAIGP-HGAVLATGGEDKRVNVWKIGRANHIWSLAGNSSPIECVCFDHAEENLYSGSSGGAVKQYDLTVGKMARNFRGHMSNVTALHSGAFDSAYLATGALDCVVKVWNTATKECVMAFKGHGAEV 152          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A383W973_TETOB (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W973_TETOB)

HSP 1 Score: 121 bits (304), Expect = 3.970e-29
Identity = 59/142 (41.55%), Postives = 88/142 (61.97%), Query Frame = 0
Query:   12 AFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNAEV 153
            ++K  EFV HSG  NC+ +G  +  VLATGG+DK V +WRIG+ + I +L G  S +E + FD  E+ + +G+A G VK++DL  GK+  +  GH SN   I+ G  +   V TGS+D  VK+W++  K+    +KGH+  V
Sbjct:    3 SYKLDEFVAHSGAVNCLRIGRNTAGVLATGGEDKKVNLWRIGQPHVIQTLVGLNSPVECVTFDPAEDKVGAGAANGTVKVWDLDTGKVCCSLTGHRSNCLTIEFGPPESNIVVTGSLDTNVKVWDLRRKDSITTYKGHSRGV 144          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A1B6FE44_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Cicadellinae TaxID=33370 RepID=A0A1B6FE44_9HEMI)

HSP 1 Score: 100 bits (250), Expect = 8.360e-25
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0
Query:   13 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNV 110
            +K  EF  HS   NC+ +G  SG+VL TGGDDK V +W IG+ N I SL+G+ + +E++RF+ TEE + +GS+GG +K++DL A K+ R   GH S +
Sbjct:    9 WKVQEFKAHSANVNCLALGQKSGRVLVTGGDDKKVNLWAIGKNNCIMSLNGHITPVETVRFNHTEELVAAGSSGGVLKIWDLEATKIMRTLTGHRSGL 106          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A7R9BGC5_9CRUS (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BGC5_9CRUS)

HSP 1 Score: 108 bits (269), Expect = 2.230e-24
Identity = 54/139 (38.85%), Postives = 82/139 (58.99%), Query Frame = 0
Query:   13 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCG------------SFDRRFVATGSMDCRVKLWNVET 139
            +K  EF  H    N V +G  SG+VL TGGDDK V +W +G+ N I +LDG+T+ +E +RF +TEE + +GS  GA+K++DL A K+ R   GH +N+  +               S D +++A+G  D  VKLW++ +
Sbjct: 1281 WKLQEFAAHDANVNSVALGRKSGRVLVTGGDDKKVNLWAVGKPNCIMALDGHTTPVECVRFSSTEELVCAGSLSGAIKVWDLEAAKIIRTLTGHKANIRCVITYKGHSSSVNGVKFSPDGQWIASGGDDAIVKLWDLRS 1419          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A7R9CXC1_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CXC1_TIMCR)

HSP 1 Score: 103 bits (256), Expect = 9.640e-23
Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 0
Query:   13 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWN 136
            F   +FV H    NC+ +G  SG+VL TGGDDK V +W +G+ N I SL G+ + +E ++F  TEE + +GS  GA+K++DL A K+ R   GH +++  ID   +   F+ +GS+D  ++  N
Sbjct:  280 FGQEDFVAHGSNVNCLALGHKSGRVLVTGGDDKKVNLWAVGKHNCIMSLSGHITPVECVKFGHTEEHVCAGSQAGALKIWDLEAAKIVRTLTGHKASIRSIDFHPYGD-FLTSGSLDTSIRFAN 402          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A482STH4_9ARCH (Katanin_con80 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482STH4_9ARCH)

HSP 1 Score: 102 bits (254), Expect = 2.140e-22
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:   14 KAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVI 113
            +  EFV HS + NC+ +G  S QVLATGG+D  V +WR+G  ++IW+L  N S IE L FD  E  +VSG+  G++K+FDL+ GK+ RN   H  NVT +
Sbjct:   11 RVQEFVAHSTQVNCLALGSKSSQVLATGGEDAKVNIWRVGSVSNIWTLGQNKSPIECLCFDADELCVVSGAMNGSLKVFDLNEGKLARNLGSHQVNVTSV 110          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A139AEY9_GONPJ (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AEY9_GONPJ)

HSP 1 Score: 100 bits (248), Expect = 1.360e-21
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 0
Query:   12 AFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTV--IDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHNA 151
            A + +EF   S    C+ +G  SG+VL TGG+D+ V +W IG+  +I SL G+TS IES+  D  EE  V+G+  G++KL+DL   K+ R   GH     V  ++   F   F A+GS D   K+W+V  K C   +   +A
Sbjct:    5 ASRLYEFSSDSSAITCLSIGRKSGRVLVTGGEDRRVNLWAIGKPQAIMSLVGHTSPIESVTLDWPEEIAVAGAGNGSIKLWDLDHSKVIRTLTGHKPTFRVGALEFHPFGE-FFASGSADATCKIWDVRRKGCIQTYHNDDA 145          
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Match: A0A804QQK3_MAIZE (Uncharacterized protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804QQK3_MAIZE)

HSP 1 Score: 96.7 bits (239), Expect = 1.430e-21
Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 0
Query:   13 FKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVWRIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMTRNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFK 147
            F   EFV H+   NC   G  + ++L TGG+D  V +W IG+  ++ SL G  S +ES+R D++E  + +G+A G +K  ++   K+ R F GH S+   +D   F   F+ATGS D  +K+W+ + K C   +K
Sbjct:   15 FAREEFVAHTLNVNCAKFGRRASRILITGGEDLKVNLWAIGKPGALLSLSGFISPVESVRPDSSEVTIGAGAASGTIK--NIEEAKVVRTFTGHRSSCASLDFHPFGE-FLATGSSDTNMKIWDTQQKRCIHTYK 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58559.13344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3J5_9PHAE7.760e-6686.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ17_ECTSI2.560e-6188.98Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A836CLK5_9STRA2.130e-5767.38WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A383W973_TETOB3.970e-2941.55Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A1B6FE44_9HEMI8.360e-2546.94Uncharacterized protein (Fragment) n=2 Tax=Cicadel... [more]
A0A7R9BGC5_9CRUS2.230e-2438.85Katanin p80 WD40 repeat-containing subunit B1 n=1 ... [more]
A0A7R9CXC1_TIMCR9.640e-2339.52Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A482STH4_9ARCH2.140e-2248.00Katanin_con80 domain-containing protein n=1 Tax=ar... [more]
A0A139AEY9_GONPJ1.360e-2138.03Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A804QQK3_MAIZE1.430e-2136.30Uncharacterized protein n=1 Tax=Zea mays TaxID=457... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 123..137
score: 32.57
coord: 80..94
score: 33.75
coord: 38..52
score: 32.77
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 11..51
e-value: 2.3E-4
score: 30.5
coord: 54..93
e-value: 0.0018
score: 27.5
coord: 96..136
e-value: 5.9E-4
score: 29.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 103..145
score: 10.375
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 18..60
score: 10.275
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 61..102
score: 10.776
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 8..153
e-value: 1.3E-33
score: 118.0
IPR024977Anaphase-promoting complex subunit 4, WD40 domainPFAMPF12894ANAPC4_WD40coord: 37..113
e-value: 1.9E-7
score: 31.3
NoneNo IPR availablePANTHERPTHR19845:SF0KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1coord: 12..153
NoneNo IPR availablePANTHERPTHR19845KATANIN P80 SUBUNITcoord: 12..153
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 123..137
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 18..153
score: 27.816
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 14..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58559contigH-elongata_contig58559:94..2280 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58559.13344.1mRNA_H-elongata_contig58559.13344.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58559 94..2280 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58559.13344.1 ID=prot_H-elongata_contig58559.13344.1|Name=mRNA_H-elongata_contig58559.13344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MTDSVSIGSFTAFKAHEFVPHSGKTNCVVVGPCSGQVLATGGDDKSVKVW
RIGRANSIWSLDGNTSAIESLRFDTTEEFLVSGSAGGAVKLFDLSAGKMT
RNFRGHMSNVTVIDCGSFDRRFVATGSMDCRVKLWNVETKECAMAFKGHN
AEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR024977Apc4_WD40_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf