prot_H-elongata_contig58423.13328.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58423.13328.1
Unique Nameprot_H-elongata_contig58423.13328.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length266
Homology
BLAST of mRNA_H-elongata_contig58423.13328.1 vs. uniprot
Match: A0A6H5KHJ6_9PHAE (Rad51 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ6_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 3.320e-81
Identity = 161/273 (58.97%), Postives = 177/273 (64.84%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKEKITSNKTFQVKSATGDLGGASRGAGVSGS--QALEIHAEAILMDCLRRIRVVRPASLFELLASIEVLGFELGQRAAVVAVDGMGSFYWQDKMAQGCGGEALVMQGAVVKALVRLVMERPVALFAAKTALFGSRGGAHDTEHREYLPQTWQRAVTYRILLRRRQRRRRSLPRLRGDESEPGDASALSLFTARVSRLR----QIGGRSGSXXXXXXXRARV----AGVAGEDRKLFSFVVSDDGIHHLPAAATLGGAEKW 263
            DGRLSILRLEQLLK KI++N TFQVKSA+G +GG       S S  Q L+   E +L+ CLRR+RVVRPA LFELLA+IEVL FELG R AVV VDGMGSF+WQDKMAQ CGGEA+ MQG V KALVRL MERPV LFAAK    G   G   TEHREYLPQ WQRAVT+R+LL+R                      ALSLFTARV  LR      GG  GS         RV    AG  GE R  F FVV+DDGIH +PAAATLG  E W
Sbjct:   94 DGRLSILRLEQLLKGKISNNTTFQVKSASGGVGGGGGTIHASPSRLQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKMAQSCGGEAVSMQGIVAKALVRLTMERPVVLFAAKN---GKDLGDAATEHREYLPQIWQRAVTFRVLLQRXXXXXXXXXXXXXXXXXXXXXXALSLFTARVLSLRLAKGNYGGGGGSFKAAAAGAGRVGRYGAGGDGESRPYF-FVVTDDGIHDVPAAATLGEGEGW 362          
BLAST of mRNA_H-elongata_contig58423.13328.1 vs. uniprot
Match: D7FPE2_ECTSI (Rad51 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPE2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 1.110e-32
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 0
Query:    1 DGRLSILRLEQLLKEKITSNKTFQVKSATGDLGGASRGAGVSGS--QALEIHAEAILMDCLRRIRVVRPASLFELLASIEVLGFELGQRAAVVAVDGMGSFYWQDKM 105
            DGRLSILRLEQLLK KI++N TFQVKSA+G +G        S S  Q L+   E +L+ CLRR+RVVRPA LFELLA+IEVL FELG R AVV VDGMGSF+WQDK+
Sbjct:   94 DGRLSILRLEQLLKGKISNNTTFQVKSASGGIGXXXXXXHASSSRPQQLQSDLEDVLIGCLRRLRVVRPAGLFELLAAIEVLRFELGHRPAVVVVDGMGSFFWQDKV 200          
BLAST of mRNA_H-elongata_contig58423.13328.1 vs. uniprot
Match: B3RU80_TRIAD (RECA_2 domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RU80_TRIAD)

HSP 1 Score: 61.6 bits (148), Expect = 2.020e-7
Identity = 37/143 (25.87%), Postives = 67/143 (46.85%), Query Frame = 0
Query:   50 HAEAILMDCLRRIRVVRPASLFELLASIEVLGFELGQRA--AVVAVDGMGSFYWQDKMAQGCGGEALVMQGAVVKALVRLVMERPVALFAAKTAL------------------FGSRGGAHDTEHREYLPQTWQRAVTYRILL 172
            H+E  +  CL R  ++R  ++ +L+ S+ +L + +       ++ +DG+GSFYWQDK +   G + L       K +  L  E  + + A K+A+                    S   +  ++H EY+P  W++ V YR +L
Sbjct:  116 HSEEFIRKCLERFYIIRCDTIHQLITSLHLLEYSISSNPDIGIMLIDGIGSFYWQDKFSSSSGVDQLC------KIVKYLCDEHNLIVLATKSAIRKQFENSRLANKSRLRNDIASNYNSTHSKHMEYMPNVWRKLVKYRYIL 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58423.13328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KHJ6_9PHAE3.320e-8158.97Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FPE2_ECTSI1.110e-3266.36Rad51 domain-containing protein n=1 Tax=Ectocarpus... [more]
B3RU80_TRIAD2.020e-725.87RECA_2 domain-containing protein n=2 Tax=Trichopla... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR030547DNA repair protein XRCC2PANTHERPTHR46644FAMILY NOT NAMEDcoord: 1..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58423contigH-elongata_contig58423:1524..3491 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58423.13328.1mRNA_H-elongata_contig58423.13328.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58423 38..3491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58423.13328.1 ID=prot_H-elongata_contig58423.13328.1|Name=mRNA_H-elongata_contig58423.13328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
DGRLSILRLEQLLKEKITSNKTFQVKSATGDLGGASRGAGVSGSQALEIH
AEAILMDCLRRIRVVRPASLFELLASIEVLGFELGQRAAVVAVDGMGSFY
WQDKMAQGCGGEALVMQGAVVKALVRLVMERPVALFAAKTALFGSRGGAH
DTEHREYLPQTWQRAVTYRILLRRRQRRRRSLPRLRGDESEPGDASALSL
FTARVSRLRQIGGRSGSGAGAGEGRARVAGVAGEDRKLFSFVVSDDGIHH
LPAAATLGGAEKWGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR030547XRCC2