prot_H-elongata_contig58194.13300.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig58194.13300.1
Unique Nameprot_H-elongata_contig58194.13300.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length317
Homology
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BLAST of mRNA_H-elongata_contig58194.13300.1 vs. uniprot
Match: A0A6H5KK48_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KK48_9PHAE)

HSP 1 Score: 409 bits (1051), Expect = 4.810e-133
Identity = 218/320 (68.12%), Postives = 257/320 (80.31%), Query Frame = 0 
Query:    1 MAPLIYTVDANGIELFSRADGRLRVLDRMLDPSEQALAEKVKRVVFQLREAEACRTRVEQRSRFEGGPGGK-EDASLLHHWVEELDQFAEDEQRFMDKMRRIVNDFVNDWGEAMLGPLAEHFLEETSTGEVASEVESGLDR--EGLAGLWPRLSKICESMQGLEASRTKVELARQMVVDQSNPESIAHALVKIQDLLIDAEEENVGLGEELLQETHGDLNSLEDCLNRAGWKLEKLVESLPTLPITLEEVEQRTAKWKDLSRKHGVLPERLGSMQAQLRVELDDLIVAEEALPLAIERETHWRIMAERAAGELSGIRRRS 317
            M+PLIYTVDAN  ELFSRADGR+R LDRM  P+E ALA+K + VV QL++AEA R R+EQR RFEGGPGG  +DASLLHHWVEELD+F E E  FMD+MR IV  FV+DWGE +LGPLAE FL  T   +   + E GL    EGL+ LWPRLS++ E M+ LEASRTKVELARQ+ V+QSNP+SIAHA+VKI+ LLIDAE+ENVGL ++LL+ TH DLNSL+D +   G KLE+ VESLP LPITLEEVE+RT KW+DL+RKHGV PERLGSMQAQLRVELD+L+VA EALPLA E+E  WR  AE AAGELS +RRR+
Sbjct:  276 MSPLIYTVDANAFELFSRADGRMRALDRMFTPAEVALADKARSVVAQLKQAEARRARLEQRCRFEGGPGGSADDASLLHHWVEELDEFREGEMAFMDRMRSIVERFVDDWGEDILGPLAEPFLSGTLLSD--KDAEEGLRGGVEGLSDLWPRLSRVREGMEDLEASRTKVELARQLAVEQSNPDSIAHAIVKIRGLLIDAEDENVGLSQDLLEGTHEDLNSLDDLVKSVGEKLERSVESLPVLPITLEEVEERTVKWRDLARKHGVPPERLGSMQAQLRVELDELVVAAEALPLAREKEERWRAAAEEAAGELSAVRRRA 593
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58194.13300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KK48_9PHAE4.810e-13368.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004604DNA recombination/repair protein RecNPANTHERPTHR11059DNA REPAIR PROTEIN RECNcoord: 18..316

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58194contigH-elongata_contig58194:580..2748 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58194.13300.1mRNA_H-elongata_contig58194.13300.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig58194 559..2748 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig58194.13300.1 ID=prot_H-elongata_contig58194.13300.1|Name=mRNA_H-elongata_contig58194.13300.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=317bp
MAPLIYTVDANGIELFSRADGRLRVLDRMLDPSEQALAEKVKRVVFQLRE
AEACRTRVEQRSRFEGGPGGKEDASLLHHWVEELDQFAEDEQRFMDKMRR
IVNDFVNDWGEAMLGPLAEHFLEETSTGEVASEVESGLDREGLAGLWPRL
SKICESMQGLEASRTKVELARQMVVDQSNPESIAHALVKIQDLLIDAEEE
NVGLGEELLQETHGDLNSLEDCLNRAGWKLEKLVESLPTLPITLEEVEQR
TAKWKDLSRKHGVLPERLGSMQAQLRVELDDLIVAEEALPLAIERETHWR
IMAERAAGELSGIRRRS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004604DNA_recomb/repair_RecN