prot_H-elongata_contig57888.13263.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57888.13263.1
Unique Nameprot_H-elongata_contig57888.13263.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length257
Homology
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 5.220e-11
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 0
Query:  181 SSIVLNASTVFINNTCGGSGGAIDLTEI--LLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGA 256
            SS+V+N +T F NNTCG +GG++ L +   L + + ++SF  NSA + GGA++ S  GIGPT  D +F  NFA+ GGA
Sbjct:  724 SSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGA 801          
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.170e-10
Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 0
Query:  162 SFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSGGAIDLTEILLVV--SRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGAV 257
            S DGG IG+ +        S++V+N +T F+NNTCG +GGA+ L   L V   +  +SF+ N+A   GGA++ S  G GP      F  N A+ GGAV
Sbjct:  534 SLDGGVIGSFSTDSVSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAV 631          
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 4.310e-10
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 0
Query:  163 FDGGAIGAATAVETV-FGHSSIVLNASTVFINNTCGGSGGAIDLT---EILLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNFAKAGGAV 257
            FDGGAI +    + +   +S+I++N +T F NN CGG+GGA+ L    ++++  +  + F  N+A   GGA++ S  G GP   +TTF+ N A+ GGAV
Sbjct:  887 FDGGAIVSPEFDDELNLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAV 985          
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Match: X6NBQ5_RETFI (Adhesin-like protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NBQ5_RETFI)

HSP 1 Score: 60.8 bits (146), Expect = 6.470e-7
Identity = 83/261 (31.80%), Postives = 118/261 (45.21%), Query Frame = 0
Query:    1 GGAIIGTSGSEIFAESVIFSFNTAQSVGGAVYATSSNITLVSTTFIGNSAGYGGAM-FVLDSVVVVTGDAAFISNNAYGDGGALFIGENSFLGWNMQPVGXXXXXXXXXXXXXXXXXAEDCKLSWSGNMSLARNKAQXXXXXXXXXXXXXXXXXXXFDSNDASFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSGGAIDLTEILLVVSRELSFLNNSAVYFGGALY---ASQKGIGPTLIDTTFSDNFAKAGGAV 257
            G A+  T    IF E  +F+ NT   +GGAV+  S N+T    TF  NSA  GGA+ +   S  +   D  F  N A   GGA++I E ++   N       XXXXXXXXXXX          +      + +N AQ                      N AS  GG  GA   + +   H    L+  T F +N  G SGGA+ +T   + +    + + N+AV   GA++   A+  G+  TL +++  DN A +GGAV
Sbjct:    9 GSAMSSTMDDFIFVEDCVFTHNTGDKLGGAVFHNSGNLTFSRCTFTSNSADQGGAIGYYSPSSRLSLWDCVFEKNFASSQGGAVYIAEGNYDIINTTCRSNVXXXXXXXXXXXDGSFVCKSHQNHIFASHITQNSAQQGGGLYIHGCQFEMRNST-ISENTASQTGG--GAILDISSGSHH----LHKIT-FRDNVAGSSGGAVTITGGNITLDA-CTIMENTAVTLAGAIHITHAAMWGLNVTLTNSSIHDNIADSGGAV 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57888.13263.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2X5_ECTSI5.220e-1147.44Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G301_ECTSI4.170e-1040.82Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI4.310e-1039.39Polymorphic Outer membrane protein G/I family n=3 ... [more]
X6NBQ5_RETFI6.470e-731.80Adhesin-like protein n=1 Tax=Reticulomyxa filosa T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 215..232
e-value: 0.045
score: 14.2
coord: 189..203
e-value: 0.049
score: 14.1
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 216..235
e-value: 1.7E-4
score: 19.3
coord: 186..203
e-value: 1.1E-4
score: 19.9
coord: 99..123
e-value: 1.8E-6
score: 25.6
NoneNo IPR availablePANTHERPTHR19862FAMILY NOT NAMEDcoord: 12..255

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57888contigH-elongata_contig57888:2108..3043 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57888.13263.1mRNA_H-elongata_contig57888.13263.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57888 2108..3043 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57888.13263.1 ID=prot_H-elongata_contig57888.13263.1|Name=mRNA_H-elongata_contig57888.13263.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=257bp
GGAIIGTSGSEIFAESVIFSFNTAQSVGGAVYATSSNITLVSTTFIGNSA
GYGGAMFVLDSVVVVTGDAAFISNNAYGDGGALFIGENSFLGWNMQPVGN
TVFVNNNAKGFGGAIFAEDCKLSWSGNMSLARNKAQYGGALYLDNVNIQA
QGPTTFDSNDASFDGGAIGAATAVETVFGHSSIVLNASTVFINNTCGGSG
GAIDLTEILLVVSRELSFLNNSAVYFGGALYASQKGIGPTLIDTTFSDNF
AKAGGAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat