prot_H-elongata_contig57786.13248.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig57786.13248.1
Unique Name	prot_H-elongata_contig57786.13248.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	116

Homology

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7G3A4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3A4_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.290e-53
Identity = 85/114 (74.56%), Postives = 97/114 (85.09%), Query Frame = 0

Query:    1 MVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 114
            +VDQG+RFPG +Y+AIS SV AHDPMVASGNMT++LL VF+LEM+ G A+FGAA+GSGR PG+FG DP  L  NP KKARYEL+EIQHCRLAM AI GIATQAVLNGG FPY G
Sbjct:  122 LVDQGVRFPGDQYAAISQSVGAHDPMVASGNMTLLLLVVFLLEMVGGAAIFGAASGSGRQPGDFGLDPLNLTSNPAKKARYELNEIQHCRLAMSAIGGIATQAVLNGGDFPYTG 235

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A836CGA6_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.960e-33
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 0

Query:    2 VDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 113
            VD GLR PG KY  +S ++ AHD MV+ GNM +ML    +LE+++G A+F AA GSGR PG+F  DP  LA +  K ARY+LSE+++ RLAM A SGIATQAVL G +FPY+
Sbjct:  120 VDMGLRLPGTKYMGLS-AISAHDAMVSGGNMVVMLHFALLLELINGAAIFAAAQGSGRKPGDFCLDPLGLAKDSAKSARYQLSEVKNGRLAMLAFSGIATQAVLTGHSFPYL 230

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: W7UAI7_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAI7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 5.770e-28
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = 0

Query:    2 VDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 112
            VD GLR P AKY+  + +V AHD  V SG+MT+ LLA+  LE++ G  ++  + GS RA G+F FDP  L  +P K ARY++SEI++ RLAM A  GIATQAVL  G FPY
Sbjct:  112 VDMGLRLPVAKYAGYN-AVQAHDVFVKSGDMTVGLLAIGFLEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRLAMLAFGGIATQAVLTNGGFPY 221

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A7S1Y167_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y167_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.500e-26
Identity = 64/140 (45.71%), Postives = 78/140 (55.71%), Query Frame = 0

Query:    3 DQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 112
            D G RFPG  YS IS ++ AHD MV +GNM  +L  +FV+E+LSG A++ AA GSGRAPG++GFDP  L  GN  KKA Y L EI++ R                             LAM   SGI TQA L G +FPY
Sbjct:  109 DLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 247

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6U4L863_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L863_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.860e-26
Identity = 64/140 (45.71%), Postives = 78/140 (55.71%), Query Frame = 0

Query:    3 DQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCR-----------------------------LAMFAISGIATQAVLNGGTFPY 112
            D G RFPG  YS IS ++ AHD MV +GNM  +L  +FV+E+LSG A++ AA GSGRAPG++GFDP  L  GN  KKA Y L EI++ R                             LAM   SGI TQA L G +FPY
Sbjct:  136 DLGFRFPGEAYSGIS-TLAAHDAMVKNGNMGFLLTVIFVIEILSGAAIYEAAKGSGRAPGDYGFDPLGLGRGNDAKKADYALKEIKNARCVPSTILDPNACKSSSHPPTSPSPPSFSSLAMLGFSGIVTQAALTGHSFPY 274

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6V1NRI4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRI4_HETAK)

HSP 1 Score: 103 bits (256), Expect = 1.180e-24
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 0

Query:    2 VDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLA-GNPTKKARYELSEIQHCRLAMFAISGIATQAVLNG-GTFPYV 113
            VD G R PGA ++ +  ++ AHD MVA G M ++LLA    E+L G AV+ AA GSGR PG+F  DPF L  G+P +K  ++  EI++ RLAM  ISGI TQA L G   FPY+
Sbjct:  121 VDLGARLPGAAFAGVRDALGAHDVMVARGPMALLLLAAGAAEVLGGAAVYEAAKGSGREPGDFQLDPFSLVKGDPVRKKDFQTKEIKNGRLAMIGISGILTQAGLEGQSVFPYL 234

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: F0YCE3_AURAN (Uncharacterized protein LHC26 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCE3_AURAN)

HSP 1 Score: 102 bits (253), Expect = 1.420e-24
Identity = 60/111 (54.05%), Postives = 71/111 (63.96%), Query Frame = 0

Query:    2 VDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 112
            VD G+ FPGA+Y  +S S+ AHD MVASGNM  MLLAV VLE+LS V V  AA GSGR  G+F +DP            +E +EIQH RLAM A SG+ TQ+ L    FPY
Sbjct:  109 VDAGIHFPGARYEGLS-SLQAHDAMVASGNMGFMLLAVGVLELLSMVGVVQAAKGSGRKAGDFSWDPLYFTQGAKADFFFE-AEIQHARLAMLAFSGLVTQSALLEKGFPY 217

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 3.400e-24
Identity = 59/115 (51.30%), Postives = 69/115 (60.00%), Query Frame = 0

Query:    3 DQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPT---KKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYVG 114
            D G R PGA+++  S++  AHD  VA+G M  +LL V   E +S VAV     GSGR PG+FGFDP  L   P    KKA  EL EI HCRLAM A  G+ TQAVL    FPY G
Sbjct:   99 DLGFRLPGAEHAVASIA--AHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A6S9U0F0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A6S9U0F0_CHRCT)

HSP 1 Score: 100 bits (249), Expect = 7.200e-24
Identity = 55/108 (50.93%), Postives = 73/108 (67.59%), Query Frame = 0

Query:    6 LRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPYV 113
            L  PG+ Y   +L  DAHD  VASG+M+ +LL + + E++S VA+     GSGRAPGEFGFDP   A + +KKA  E+ E+ + RLAM A SG+ TQAVL G +FPY+
Sbjct:  123 LTLPGSIYQVSTL--DAHDVSVASGSMSQLLLWIGIAEIISVVAIQQMLAGSGRAPGEFGFDPMGFAKDASKKADLEMKELANGRLAMMAFSGMVTQAVLTGNSFPYL 228

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BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Match: A0A8J5XPQ1_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XPQ1_DIALT)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-23
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 0

Query:    1 MVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAVFGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIATQAVLNGGTFPY 112
            +VD G+ FPGA+Y  +  ++ AH+ MV SGNM ++L+AV +LE+  G+A++  A GSGRA G++ FDP   A +       +L EI++ RLAM A SGI TQA L+G   PY
Sbjct:   89 VVDLGIHFPGAQYEGLR-ALTAHNAMVESGNMWLLLIAVSILELAGGLALYEQANGSGRAAGDYKFDPLGYAQDEATLQELQLKEIKNGRLAMIAFSGIVTQAALSGRGLPY 199

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot

BLAST of mRNA_H-elongata_contig57786.13248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G3A4_ECTSI	1.290e-53	74.56	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A836CGA6_9STRA	1.960e-33	56.25	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
W7UAI7_9STRA	5.770e-28	53.15	Light-harvesting protein n=2 Tax=Monodopsidaceae T...	[more]
A0A7S1Y167_9STRA	4.500e-26	45.71	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A6U4L863_9STRA	7.860e-26	45.71	Hypothetical protein n=2 Tax=Phaeomonas parva TaxI...	[more]
A0A6V1NRI4_HETAK	1.180e-24	50.00	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
F0YCE3_AURAN	1.420e-24	54.05	Uncharacterized protein LHC26 n=1 Tax=Aureococcus ...	[more]
D7FWB9_ECTSI	3.400e-24	51.30	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6S9U0F0_CHRCT	7.200e-24	50.93	Hypothetical protein n=1 Tax=Chrysotila carterae T...	[more]
A0A8J5XPQ1_DIALT	1.040e-23	46.43	Uncharacterized protein n=2 Tax=Diacronema lutheri...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 28..103 e-value: 7.8E-14 score: 52.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 5..112 e-value: 6.2E-17 score: 64.0
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 22..112
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 55..115
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..33
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 34..54
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 10..107
None	No IPR available	TMHMM	TMhelix		coord: 32..54
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 22..112

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig57786	contig	H-elongata_contig57786:880..1963 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig57786.13248.1	mRNA_H-elongata_contig57786.13248.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig57786 850..1963 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig57786.13248.1 ID=prot_H-elongata_contig57786.13248.1|Name=mRNA_H-elongata_contig57786.13248.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MVDQGLRFPGAKYSAISLSVDAHDPMVASGNMTIMLLAVFVLEMLSGVAV
FGAATGSGRAPGEFGFDPFKLAGNPTKKARYELSEIQHCRLAMFAISGIA
TQAVLNGGTFPYVGN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln