prot_H-elongata_contig57666.13234.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57666.13234.1
Unique Nameprot_H-elongata_contig57666.13234.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length57
Homology
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: D8LTB6_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTB6_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.500e-21
Identity = 41/56 (73.21%), Postives = 51/56 (91.07%), Query Frame = 0 
Query:    1 MTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 56
            MTI+DSA++SAAAA DVL+LCKML+ CDDL++ A+KLLNDFR  +KRTVLHQVCH+
Sbjct:   39 MTIRDSADDSAAAAGDVLDLCKMLEDCDDLDSDAAKLLNDFRIRSKRTVLHQVCHI 94
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-19
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0 
Query:    1 MTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 56
            MTI+DSA +SAAAA DVL+LCKML+ CDDL++ A++LLNDFR  +KRTVLHQVCH+
Sbjct:  123 MTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178
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BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 8.000e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0 
Query:    1 MTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVLHQVCHV 56
            MTIKDS EESAAAAD VLELC+MLD    L+ + + +L  F   TKRTVLHQVCHV
Sbjct:  337 MTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57666.13234.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTB6_ECTSI4.500e-2173.21RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5JLZ3_9PHAE2.200e-1971.43RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5KZG9_9PHAE8.000e-1366.07Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.2300coord: 1..56
e-value: 8.8E-12
score: 46.8
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 2..55
e-value: 7.2E-8
score: 32.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57666contigH-elongata_contig57666:922..3518 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57666.13234.1mRNA_H-elongata_contig57666.13234.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57666 367..3570 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57666.13234.1 ID=prot_H-elongata_contig57666.13234.1|Name=mRNA_H-elongata_contig57666.13234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MTIKDSAEESAAAADDVLELCKMLDACDDLNAKASKLLNDFRTMTKRTVL
HQVCHV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA