prot_H-elongata_contig57655.13233.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57655.13233.1
Unique Nameprot_H-elongata_contig57655.13233.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length228
Homology
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BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 3.890e-90
Identity = 176/221 (79.64%), Postives = 191/221 (86.43%), Query Frame = 0 
Query:    1 MTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGISQDKLLELRAKRLSHKRNTIVSVGDESADTSVDPKFLVADKAIVAQIRAKEICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTRADREARQTSSNRGAT---SGXXXXXXXXXXXXXELAGVTPVIIVPNVLSSLLTLYNAKDFLQDGRRVCFIP 218
            MT+TEMREAKKAHAQRLENRGGGGSRAGLLSG QDPLL+ R E +GI GISQDKLLELRAKRLSHKRNTIVSVGD++AD  VDPKFL ADK IVA+I A E+  +DRNS+LRKEGKSF+FALEYYNQVRRKEKDQARE+VDG YGKRKTRADREARQ+ S RG T   SG  XXXXXXXXXXX+LAG TPVIIVP V +SL+TLYNA DFLQDG    FIP
Sbjct:  125 MTDTEMREAKKAHAQRLENRGGGGSRAGLLSG-QDPLLS-RGEGTGIGGISQDKLLELRAKRLSHKRNTIVSVGDDAADNPVDPKFLGADKMIVAKILANEMSISDRNSVLRKEGKSFRFALEYYNQVRRKEKDQARENVDG-YGKRKTRADREARQSGSGRGGTISASGGRXXXXXXXXXXXDLAGATPVIIVPTVPTSLVTLYNATDFLQDGN---FIP 339
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BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: A0A835YIM7_9STRA (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.140e-38
Identity = 97/231 (41.99%), Postives = 143/231 (61.90%), Query Frame = 0 
Query:    1 MTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARV--ESSGIDGISQDKLLELRAKRLSHKRNTI-VSVGDESAD--TSVDPKFLVADKAIVAQIRAKEICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTRA-----DREARQTSSNRGATSGXXXXXXXXXXXXXELAGVTPVIIVPNVLSSLLTLYNAKDFLQDGRRVCFIPGGG 221
            +TE ++R+AK+ HA+RL    GG +RA  L      +++ R+  ES  ++G+S DKLLELR KRL+ KR+T  +  G E  +   +VDP FL AD+ +VA IRAKEI   DRNS+LR+ GK FKFA +YY +VRRKEK+ A+E  DG+YGK+++R      DR+     ++  A+               +     P+I+VPN+ S+++TL NAK+F ++GR   F+P  G
Sbjct:  136 LTEDQLRDAKQRHAERL----GGPARARAL------IISDRMAGESELLEGMSSDKLLELRTKRLAQKRSTFSLEAGGEPGEEEAAVDPAFLDADRQMVAHIRAKEIRVLDRNSVLRRPGKDFKFAHDYYQEVRRKEKEMAKEKEDGTYGKKRSRGGGVAPDRDRCAVVASVSASGEFAQCSCVEDAALADPNAGPPIIVVPNLQSAVITLANAKEFFEEGR---FVPANG 353
[Close]
BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Match: A0A6H5L1F0_9PHAE (CDC73_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.000e-27
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0 
Query:    1 MTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGISQDKLLELRAKRLSHKRNTIVS 72
            MT+TEMREAKKAHAQRLENRGGGGSRAGLLSG QDPLL+ R E +GI GISQDKLLELRAKRLSHKRNTIVS
Sbjct:  125 MTDTEMREAKKAHAQRLENRGGGGSRAGLLSG-QDPLLS-RGEGTGIGGISQDKLLELRAKRLSHKRNTIVS 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57655.13233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIK5_ECTSI3.890e-9079.64RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A835YIM7_9STRA9.140e-3841.99RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A6H5L1F0_9PHAE2.000e-2788.89CDC73_N domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032041Paf1 complex subunit Cdc73, N-terminal domainPFAMPF16050CDC73_Ncoord: 44..147
e-value: 1.5E-8
score: 34.3
IPR038103Cell division control protein 73, C-terminal domain superfamilyGENE3D3.40.50.11990coord: 178..218
e-value: 1.4E-5
score: 26.5
IPR007852Cdc73/ParafibrominPANTHERPTHR12466CDC73 DOMAIN PROTEINcoord: 53..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57655contigH-elongata_contig57655:756..3739 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57655.13233.1mRNA_H-elongata_contig57655.13233.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57655 753..3739 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57655.13233.1 ID=prot_H-elongata_contig57655.13233.1|Name=mRNA_H-elongata_contig57655.13233.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MTETEMREAKKAHAQRLENRGGGGSRAGLLSGPQDPLLAARVESSGIDGI
SQDKLLELRAKRLSHKRNTIVSVGDESADTSVDPKFLVADKAIVAQIRAK
EICFADRNSILRKEGKSFKFALEYYNQVRRKEKDQARESVDGSYGKRKTR
ADREARQTSSNRGATSGSSAARGGAGGAGGELAGVTPVIIVPNVLSSLLT
LYNAKDFLQDGRRVCFIPGGGGRDRRER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032041Cdc73_N
IPR038103CDC73_C_sf
IPR007852Cdc73/Parafibromin