prot_H-elongata_contig57601.13230.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57601.13230.1
Unique Nameprot_H-elongata_contig57601.13230.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length156
Homology
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: D7FWZ0_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ0_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 7.580e-34
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 
Query:   88 VVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            VVSTTAK+E QYLHSHIQFIIDGF+GQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ
Sbjct:  341 VVSTTAKTEGQYLHSHIQFIIDGFVGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 409
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A835YYE4_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE4_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.020e-33
Identity = 117/156 (75.00%), Postives = 125/156 (80.13%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            MTDVFGNYV+QKLFD+G   QRE LAS                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VV  TAK+E  YLHSHIQFIID F+GQVEKLS HAYGCRVIQRILEHCID Q+  +LEEI++SFS LIQ
Sbjct:   43 MTDVFGNYVIQKLFDHGGPDQRENLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVVCATAKAEGAYLHSHIQFIIDAFMGQVEKLSTHAYGCRVIQRILEHCIDAQRDPVLEEIRNSFSALIQ 198
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A6H5KS31_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS31_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.130e-28
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0 
Query:   88 VVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK 148
            VVSTTAK+E QYLHSHIQFIIDGF+GQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK
Sbjct:  636 VVSTTAKTEGQYLHSHIQFIIDGFVGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIK 696
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A7S2H0V0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0V0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.970e-22
Identity = 59/161 (36.65%), Postives = 76/161 (47.20%), Query Frame = 0 
Query:    3 DVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKS--------ERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLI 155
            DVFGNYVVQKL D+G+++ + +L   L G  + LSLQMYGC                                            V+S  AK+        +  +    IQFIID  +G V  LS H YGCRV+QRILEHC+D QK V L+EI     +L+
Sbjct:    6 DVFGNYVVQKLLDHGTSEMKASLRDTLTGEMLTLSLQMYGCRVVQKALETLDDDDLPGLLAEFHQNVLACIHDQNGNHVMQKCIEVMSVKAKAANASGDVQKELFCSGQIQFIIDDVMGNVPGLSCHPYGCRVLQRILEHCVDPQKTVALDEISRCHRLLL 166
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A2G9P1B3_LITCT (PUM-HD domain-containing protein (Fragment) n=2 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9P1B3_LITCT)

HSP 1 Score: 94.4 bits (233), Expect = 6.560e-21
Identity = 78/156 (50.00%), Postives = 90/156 (57.69%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            M DVFGNYV+QK F+ GS +Q+ ALA  + GH + L+LQMYGC                         XXXXXXXXXXXXXXXXXXX      +S        +QFIID F  QV  LS H YGCRVIQRILEHC+ EQ   ILEE+      L+Q
Sbjct:   73 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPPDQQVINDMVRELDXXXXXXXXXXXXXXXXXXXXXXXQPQS--------LQFIIDAFKSQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQ 220
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI000C7E9CEA (pumilio homolog 1 isoform X7 n=1 Tax=Otolemur garnettii TaxID=30611 RepID=UPI000C7E9CEA)

HSP 1 Score: 97.1 bits (240), Expect = 1.860e-20
Identity = 78/156 (50.00%), Postives = 92/156 (58.97%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            M DVFGNYV+QK F+ GS +Q+ ALA  + GH + L+LQMYGC                         XXXXXXXXXXXXXXXXXXX+     +S        +QFIID F GQV  LS H YGCRVIQRILEHC+ +Q   ILEE+      L+Q
Sbjct:  818 MVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDXXXXXXXXXXXXXXXXXXXIECVQPQS--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQ 965
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI000740176F (pumilio homolog 2 isoform X1 n=7 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI000740176F)

HSP 1 Score: 97.1 bits (240), Expect = 1.900e-20
Identity = 78/156 (50.00%), Postives = 91/156 (58.33%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            MTDVFGNYV+QK F+ GS  Q+ ALA+ + GH + L+LQMYGC                          XXXXXXXXXXXXXXXXXX+     ++        +QFIID F GQV  LS H YGCRVIQRILEHC  EQ   ILEE+      L+Q
Sbjct:  906 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPQA--------LQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTQEQTLPILEELHQHTEQLVQ 1053
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A8C2D9I9_CYPCA (Pumilio RNA-binding family member 1 n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2D9I9_CYPCA)

HSP 1 Score: 96.3 bits (238), Expect = 3.490e-20
Identity = 78/156 (50.00%), Postives = 89/156 (57.05%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            M DVFGNYV+QK F+ GS  Q+ ALA  + GH + L+LQMYGC                          XXXXXXXXXXXXXXXXXX+      +        +QFIID F GQV  LS H YGCRVIQRILEHC+ EQ   ILEEI      L+Q
Sbjct:  818 MVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPHA--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLVQ 965
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: A0A8C2D9W4_CYPCA (Pumilio RNA-binding family member 1 n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2D9W4_CYPCA)

HSP 1 Score: 96.3 bits (238), Expect = 3.500e-20
Identity = 78/156 (50.00%), Postives = 89/156 (57.05%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            M DVFGNYV+QK F+ GS  Q+ ALA  + GH + L+LQMYGC                          XXXXXXXXXXXXXXXXXX+      +        +QFIID F GQV  LS H YGCRVIQRILEHC+ EQ   ILEEI      L+Q
Sbjct:  829 MVDVFGNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMVRELDGXXXXXXXXXXXXXXXXXXIECVQPHA--------LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLSILEEIHQHTEQLVQ 976
[Close]
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Match: UPI001B7D4547 (pumilio homolog 2 isoform X8 n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=UPI001B7D4547)

HSP 1 Score: 95.9 bits (237), Expect = 4.670e-20
Identity = 80/156 (51.28%), Postives = 91/156 (58.33%), Query Frame = 0 
Query:    1 MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSTTAKSERQYLHSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDSFSVLIQ 156
            MTDVFGNYV+QK F+ GS  Q+ ALA+ + GH + L+LQMYGC                         XXXXXXXXXXXXXXXXXXX      +S        +QFIID F GQV  LS H YGCRVIQRILEHC  EQ   ILEE+      L+Q
Sbjct:  769 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISPDQQVINEMVKELDXXXXXXXXXXXXXXXXXXXXXXXXXQS--------LQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQ 916
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57601.13230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWZ0_ECTSI7.580e-3495.65PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YYE4_9STRA2.020e-3375.00Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
A0A6H5KS31_9PHAE2.130e-2895.08PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2H0V0_9STRA2.970e-2236.65Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A2G9P1B3_LITCT6.560e-2150.00PUM-HD domain-containing protein (Fragment) n=2 Ta... [more]
UPI000C7E9CEA1.860e-2050.00pumilio homolog 1 isoform X7 n=1 Tax=Otolemur garn... [more]
UPI000740176F1.900e-2050.00pumilio homolog 2 isoform X1 n=7 Tax=Lepisosteus o... [more]
A0A8C2D9I9_CYPCA3.490e-2050.00Pumilio RNA-binding family member 1 n=1 Tax=Cyprin... [more]
A0A8C2D9W4_CYPCA3.500e-2050.00Pumilio RNA-binding family member 1 n=2 Tax=Cyprin... [more]
UPI001B7D45474.670e-2051.28pumilio homolog 2 isoform X8 n=1 Tax=Aquila chrysa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 28..63
e-value: 4.9E-6
score: 36.1
coord: 110..145
e-value: 1.4E-7
score: 41.2
coord: 64..99
e-value: 0.0045
score: 26.2
coord: 1..27
e-value: 14.0
score: 11.8
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 111..143
e-value: 1.8E-8
score: 33.6
coord: 29..54
e-value: 9.2E-7
score: 28.2
coord: 1..23
e-value: 9.7E-6
score: 25.0
coord: 68..92
e-value: 2.9E-7
score: 29.8
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 1..25
score: 7.334
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 110..145
score: 11.044
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 27..63
score: 9.784
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 64..101
score: 8.944
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..156
e-value: 1.0E-54
score: 187.8
NoneNo IPR availablePANTHERPTHR12537:SF119PUMILIO HOMOLOG 6, CHLOROPLASTICcoord: 1..156
NoneNo IPR availablePANTHERPTHR12537RNA BINDING PROTEIN PUMILIO-RELATEDcoord: 1..156
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..156
score: 51.256
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 1..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57601contigH-elongata_contig57601:1370..3671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57601.13230.1mRNA_H-elongata_contig57601.13230.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57601 1352..3671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57601.13230.1 ID=prot_H-elongata_contig57601.13230.1|Name=mRNA_H-elongata_contig57601.13230.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MTDVFGNYVVQKLFDNGSTKQREALASFLVGHAVQLSLQMYGCRVVQKAL
EYASIDTLIALVSEFGGQVMKCVQDQNGNHVVQKCIEVVSTTAKSERQYL
HSHIQFIIDGFLGQVEKLSMHAYGCRVIQRILEHCIDEQKQVILEEIKDS
FSVLIQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold