prot_H-elongata_contig57507.13220.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57507.13220.1
Unique Nameprot_H-elongata_contig57507.13220.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length162
Homology
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BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Match: D8LF98_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF98_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 7.540e-72
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 0 
Query:    1 VDYAGGAENPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQRVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNTQFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHYVRKV 154
            +D  GGA+  G KGGIIDK STGRRR KENIAQKTGKEAVDN+EF+ER QRV +L+  V KVRDAMKRQLDCSRALC+ACADLGNACSE  +RDV FQN QFQLDED+RK+LD A+A A+ES++NK+APF EL+KM+++RN LKLDYDHY+RKV
Sbjct:   31 LDVGGGADPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKV 184
[Close]
BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Match: A0A835YV50_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV50_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.020e-37
Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 0 
Query:    9 NPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQRVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNTQFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHYVRKV 154
            N  +  GI  K++  RRRF E + QK GKE  D+ +F++R +   +L   V KVRD+MK  LD +RA+     DL NAC +A+ RD  F  TQ QLD+ +R  LD+++  AL+S+D KLAPF EL++ V  RNNLKLDYDHYVRKV
Sbjct:   31 NDNSGAGIKGKMAVNRRRFNEKLGQKMGKEGTDDADFEDRHRATQDLHFKVCKVRDSMKALLDATRAMSQRAVDLSNACGDADARDQDFITTQLQLDQAMRSMLDDSVGKALDSLDRKLAPFKELDERVKTRNNLKLDYDHYVRKV 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF98_ECTSI7.540e-7274.03SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YV50_9STRA1.020e-3750.00SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027267AH/BAR domain superfamilyGENE3D1.20.1270.60coord: 14..155
e-value: 8.3E-13
score: 50.3
IPR027267AH/BAR domain superfamilySUPERFAMILY103657BAR/IMD domain-likecoord: 38..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57507contigH-elongata_contig57507:2517..3492 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57507.13220.1mRNA_H-elongata_contig57507.13220.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57507 2517..3492 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57507.13220.1 ID=prot_H-elongata_contig57507.13220.1|Name=mRNA_H-elongata_contig57507.13220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
VDYAGGAENPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQ
RVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNT
QFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHY
VRKVWYEICWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027267AH/BAR_dom_sf